G444074


Basic Information

Item Value
gene id G444074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79094653 ~ 79095635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU502595
CCCAGAACAGAGATGATGGAGAAACTTCACCCAGAACAGAGATGACGGAGAAACCTCACCCAGAACAGAGAAAGTGTTTGTTTAACCCAGACAACCCCTTCAGTCTTGGCagctgttgtttttttgttcatgTGTAATATCACATAATGAACAGCAAATTAGCTGTGATCTGGCGGGAGATAACAAACGGCTAATCAGAGAATGCTGGAATGTCTGCAGCTTAACAACTAAGTAATGCTTTGCTGTGCAGGGCAGGCCTTATGAATGAGAGCCTATTTCCTTTGGGGCCCTCAGTCGCATACCGACAATCCTCCTCTCACCTGCTGCTAATTTGTCtctcagagagaagaagaaaggagaaagaagaagCAGAAAGAAGGAGAAGAATAATGAgaagaatcaaatcaaactttatttgtcacatgcgccaaataaaacaagtgtagtagaccttactgtgaagtgcaatacttacaagctcttaaccaacagtgcacttCAAGAAAGAGTTATGAAAaaatttaccaaataaactaaagtcagaaaatataaaaaagtaacacaacaaaatatcaataatgaggctatatttGCGGGGgtaggttagtcgaggtaatttgtacatgtaacTAGGAGTGAAGTGACTATGTAAATactccggtggccatttgatgaattgttcagcagtcttatggcttggggatagaagctgttaaggagccttttggtcaaAGACTTGGTGCTGCGATActgttgaagaagaagaagaagaagaagaagaaggaggaaaaagaaagaagaaagaagaagaaggatAAGAAGAAGAACGAAGGAAAAAGAAAAAGAAGAAAgaataaggaaagagaaagaacaagaagaaaaacaagaaag
>TU502596
CCCAGAACAGAGATGATGGAGAAACTTCACCCAGAACAGAGATGACGGAGAAACCTCACCCAGAACAGAGAAAGTGTTTGTTTAACCCAGACAACCCCTTCAGTCTTGGCagctgttgtttttttgttcatgTGTAATATCACATAATGAACAGCAAATTAGCTGTGATCTGGCGGGAGATAACAAACGGCTAATCAGAGAATGCTGGAATGTCTGCAGCTTAACAACTAAGTAATGCTTTGCTGTGCAGGGCAGGCCTTATGAATGAGAGCCTATTTCCTTTGGGGCCCTCAGTCGCATACCGACAATCCTCCTCTCACCTGCTGCTAATTTGTCtctcagagagaagaagaaaggagaaagaagaagCAGAAAGAAGGAGAAGAATAATGAgaagaatcaaatcaaactttatttgtcacatgcgccaaataaaacaagtgtagtagaccttactgtgaagtgcaatacttacaagctcttaaccaacagtgcacttCAAGAAAGAGTTATGAAAaaatttaccaaataaactaaagtcagaaaatataaaaaagtaacacaacaaaatatcaataatgaggctatatttGCGGGGgtaggttagtcgaggtaatttgtacatgtaacTAGGAGTGAAGTGACTATGTAAATactccggtggccatttgatgaattgttcagcagtcttatggcttggggatagaagctgttaaggagccttttggtcaaAGACTTGGTGCTGCGATActgttgaagaagaagaagaagaagaagaagaacaagaagaaaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU502595 False 891 lncRNA 0.39 2 79094653 79095635
TU502596 True 796 lncRNA 0.40 2 79094688 79095635

Neighbor

gene id symbol gene type direction distance location
hyi hyi coding downstream 707586 78383005 ~ 78387067 (-)
LOC110524621 med8 coding downstream 848823 78239768 ~ 78245830 (-)
glulb LOC106560331 coding downstream 1106998 77983744 ~ 77987655 (-)
znf648 LOC106560330 coding downstream 1155652 77914925 ~ 77939001 (-)
gadd45ab LOC106560326 coding downstream 1219810 77871765 ~ 77874843 (-)
LOC110524635 LOC106560345 coding upstream 123518 79219153 ~ 79237461 (-)
LOC118964722 LOC106584191 coding upstream 147612 79243247 ~ 79282591 (-)
LOC118964780 NA coding upstream 198624 79294259 ~ 79294385 (-)
cdh2 LOC106560349 coding upstream 289905 79385540 ~ 79459507 (-)
LOC118964535 NA coding upstream 440949 79536584 ~ 79606825 (-)
G444000 NA non-coding downstream 33750 78963166 ~ 79060903 (-)
G443998 NA non-coding downstream 34912 79058789 ~ 79059741 (-)
G444017 NA non-coding downstream 103571 78990404 ~ 78991082 (-)
G443972 NA non-coding downstream 161837 78931526 ~ 78932816 (-)
G443892 NA non-coding downstream 301627 78790353 ~ 78793026 (-)
G444104 NA non-coding upstream 47129 79142764 ~ 79143169 (-)
G444106 NA non-coding upstream 48453 79144088 ~ 79144391 (-)
G444115 NA non-coding upstream 58358 79153993 ~ 79154213 (-)
G444141 NA non-coding upstream 113156 79208791 ~ 79209012 (-)
G444142 NA non-coding upstream 114727 79210362 ~ 79210571 (-)
G444001 NA other downstream 128624 78964631 ~ 78966029 (-)
G442807 NA other downstream 1012643 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 1467439 77623299 ~ 77627214 (-)
G442115 NA other downstream 1687518 77406742 ~ 77407135 (-)
G441630 NA other downstream 2073278 77013999 ~ 77021375 (-)
G444691 LOC106605670 other upstream 635352 79730987 ~ 79731536 (-)
G445115 NA other upstream 886826 79982461 ~ 79987704 (-)
G445197 NA other upstream 1081127 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 1129840 80223240 ~ 80233361 (-)

Expression


Co-expression Network