XLOC_023574


Basic Information

Item Value
gene id XLOC_023574
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 32362433 ~ 32363362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047223
TCCTCATAGCGTTCACTTAAGCCCCAGATCTTTTCTCAGATCCTTGAGACTTGATTTTGAATTTGTTGAAGAATCCAGTCTCAGTCAAATCAGCATCTGAGAGActattctgctctgattggtcacatgGGTCTACCTCGCACTGATTGGTCACATGGGTCTACCTCACACTGATTGATCACGTGGGTCTACATCGCACTGATTGGGCACATGGGTCTACATCACACTGATTAGGCACATGGACCAACTTTACACTGATTGGTCATATATGTCCACCTTCTCTGGATGGTCAGATGGatctgctctgctctgattggtcatttgGATCTACTCTGGTCTAATTAATCAGATGGATCTACTCTGATCTGATGGAGCACATGTGTCTactttactctgattggtcagatggatcTACTCTCTTCTGATGGGTCATAGGGGCCAATTTTGCTCTGAATGGTCATTTGGATCTACTCTGTTCTGATGGGTCAAATGGATCTTTATtggtctgattggtcagatggatcTGCTCTGCACTAATTGGTTACATGGGTCTACTCTGCTTTGATGTGATCAGATGGGTGTACTCTGGTCTGATAGGTCTAATGGATCTACTCtggtctgctctgattggtcacatgggtctactctgctctgattggttagatggaTCTGCTCTagtctgattggtcaaatggatCCTTTTTGATCTGATTGGTAAGATGGATCTgctctgctcttattggtcacATGGGTCTTCTCTGCTCTGTTTGGTCAGATGGGTGTTCTCTGGTCTGATAGGTCAGATGGATCTGCTCTACTCTGATAAGTCACATGGgtctactttgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047223 True 846 lncRNA 0.45 2 32362433 32363362

Neighbor

gene id symbol gene type direction distance location
XLOC_023573 trdmt1 coding downstream 166021 32151629 ~ 32196412 (-)
XLOC_023572 cubn coding downstream 212157 32035759 ~ 32150276 (-)
XLOC_023571 rsu1 coding downstream 336796 31952333 ~ 32025637 (-)
XLOC_023570 c1ql3a coding downstream 419747 31940504 ~ 31942686 (-)
XLOC_023569 si:ch73-78o10.1 coding downstream 457433 31896724 ~ 31905000 (-)
XLOC_023575 NA coding upstream 43532 32406894 ~ 32408404 (-)
XLOC_023576 itprid1 coding upstream 51281 32414643 ~ 32452355 (-)
XLOC_023577 eif1b coding upstream 154553 32517915 ~ 32522655 (-)
XLOC_023578 PTCHD3 coding upstream 197033 32560395 ~ 32563875 (-)
XLOC_023579 rdh12l coding upstream 210118 32573480 ~ 32582880 (-)
XLOC_023665 dre-mir-735 misc upstream 5814599 38177961 ~ 38178027 (-)
XLOC_023567 CT737162.3 non-coding downstream 575856 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 606082 31755247 ~ 31756351 (-)
XLOC_023565 NA non-coding downstream 644952 31709501 ~ 31717481 (-)
XLOC_023564 CABZ01029420.1 non-coding downstream 722006 31640312 ~ 31640427 (-)
XLOC_023563 NA non-coding downstream 904239 31455086 ~ 31458194 (-)
XLOC_023581 NA non-coding upstream 344079 32707441 ~ 33221175 (-)
XLOC_023587 NA non-coding upstream 1186500 33549862 ~ 33670492 (-)
XLOC_023594 NA non-coding upstream 1471462 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 1693917 34057279 ~ 34069758 (-)

Expression


Co-expression Network