XLOC_023575


Basic Information

Item Value
gene id XLOC_023575
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 32406894 ~ 32408404 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046877
AGTCACGCTCCGGCTCTGCTGCACTGAGACTGGAGCATGTCCACCGACTGTGTGAGGTCACTCTCAGACAAAGCCGAACACACACTCACCATGCACGAACACCTCTATGAAATGGACAACCAGAAACATGTCGCCGAGGAACATCAGCAGGGTAAACTGGGACAGAAAAAACCACGGAGAAAAGACACTCCGGTCCTCAACAGCCCTCCGCTTTTACCAGGCGTGAGATTGATGAAGACTGAAGCTCGAATGATTCATCAGGAGGATGAGGAGAAGGAGATGAAGAAGTAGATTTGTTTGATTGTtagtatttgttgttattttccgAGCCTTCATTAAATGTAGGTTTTGCA
>TCONS_00046606
AGTCACGCTCCGGCTCTGCTGCACTGAGACTGGAGCATGTCCACCGACTGTGTGAGGTCACTCTCAGACAAAGCCGAACACACACTCACCATGCACGAACACCTCTATGAAATGGACAACCAGAAACATGTCGCCGAGGAACATCAGCAGGGTAAACTGGGACAGAAAAAACCACGGAGAAAAGACACTCCGGTCCTCAACAGCCCTCCGCTTTTACCAGGCGTGAGATTGATGAAGACTGAAGCTCGAATGATTCATCAGGAGGATGAGGAGAAGGAGATGAAGAAGTAGATTTGTTTGATTGTtagtatttgttgttattttccgAGCCTTCATTAAATGTAGGTTTTGCA

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091204-123 Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in regulation of phosphatase activity. Human ortholog(s) of this gene implicated in familial hypercholesterolemia. Orthologous to human PPP1R17 (protein phosphatase 1 regulatory subunit 17).

Ensembl:

ensembl_id ENSDARG00000093677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046877 False 353 lncRNA 0.47 4 32406894 32408404
TCONS_00046606 True 353 mRNA 0.47 4 32406894 32408404

Neighbor

gene id symbol gene type direction distance location
XLOC_023574 NA coding downstream 43532 32362433 ~ 32363362 (-)
XLOC_023573 trdmt1 coding downstream 210482 32151629 ~ 32196412 (-)
XLOC_023572 cubn coding downstream 256618 32035759 ~ 32150276 (-)
XLOC_023571 rsu1 coding downstream 381257 31952333 ~ 32025637 (-)
XLOC_023570 c1ql3a coding downstream 464208 31940504 ~ 31942686 (-)
XLOC_023576 itprid1 coding upstream 6239 32414643 ~ 32452355 (-)
XLOC_023577 eif1b coding upstream 109511 32517915 ~ 32522655 (-)
XLOC_023578 PTCHD3 coding upstream 151991 32560395 ~ 32563875 (-)
XLOC_023579 rdh12l coding upstream 165076 32573480 ~ 32582880 (-)
XLOC_023580 ca2 coding upstream 241823 32650227 ~ 32665283 (-)
XLOC_023665 dre-mir-735 misc upstream 5769557 38177961 ~ 38178027 (-)
XLOC_023567 CT737162.3 non-coding downstream 620317 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 650543 31755247 ~ 31756351 (-)
XLOC_023565 NA non-coding downstream 689413 31709501 ~ 31717481 (-)
XLOC_023564 CABZ01029420.1 non-coding downstream 766467 31640312 ~ 31640427 (-)
XLOC_023581 NA non-coding upstream 299037 32707441 ~ 33221175 (-)
XLOC_023587 NA non-coding upstream 1141458 33549862 ~ 33670492 (-)
XLOC_023594 NA non-coding upstream 1426420 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 1648875 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 1704352 34112756 ~ 34115514 (-)

Expression


Co-expression Network