XLOC_023577 (eif1b)


Basic Information

Item Value
gene id XLOC_023577
gene name eif1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 32517915 ~ 32522655 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046608
CAGCTGCAGATTCACTTACAGGCTTTTGTCATCGCGCATTAAAGCACTTCCGCTCTGAGCCACGCGCTACAGACTCACTGCGACTCGCCTTAAGGCAGATTACAAGCAGCCGCTCGGTGATTTCGACGTTGTTTTGTAAAATAACTGCTGGTTTAAGCGGCTCCGATCGCCGACATCTTTCATCCGTCGAAGTAACCGCAGTAATATCGCATGTCCAATATACAGAACCTCCAGTCCTTTGATCCCTTTGCTGATGCAACTAAGGGTGACGACTTGCTCCCGGCGGGGACGGAGGATAAAATCCATATAAGGATTCAGCAACGAAACGGCCGCAAAACGCTGACCACAGTGCAAGGCATCGCTGATGATTATGATAAAAAGAAGCTTGTGAAAGCCTTCAAAAAGAAATTTGCCTGCAATGGGACAGTGATCGAGCACCCGGAGTATGGAGAGGTGATTCAGCTACAGGGAGACCAGAGGAAGAATATCTGTCAGTTTCTGCTAgagATCAACATTGTAAAAGAGGAGCAGTTGAAGGTTCACGGTTTTTAAAAGGGGGGGCTGTTTTCTACAGGACTGCACCAGCATGTAGCAATCCTAGTACATTCATGGCAGGGTTTTTGTGACCATATGCTAACAACACTGACAGCAGGGTAAAAACtgtttggggtttttttttttttttttttttttttttttttttttttttttttttttttttttttttgcagttgtttCAAGCTCGAATCTTCATAATGACCTCAACCGGACCACTAATTCCAGGCTGGTCTGGATTAGATACTGAATATTTGTTGATGCTTGTGAACGTTTTATGATAGATACACTCAACTGCATGATCTTTTTACCAAGGACAATAAAATGTATGTGACTTTGCA
>TCONS_00046609
ACAGACTCACTGCGACTCGCCTTAAGGCAGATTACAAGCAGCCGCTCGGTGATTTCGACGTTGTTTTGTAAAATAACTGCTGGTTTAAGCGGCTCCGATCGCCGACATCTTTCATCCGTCGAAGTAACCGCAGTAATATCGCATGTCCAATATACAGAACCTCCAGTCCTTTGATCCCTTTGCTGATGCAACTAAGGGTGACGACTTGCTCCCGGCGGGGACGGAGGATAAAATCCATATAAGGATTCAGCAACGAAACGGCCGCAAAACGCTGACCACAGTGCAAGGCATCGCTGATGATTATGATAAAAAGAAGCTTGTGAAAGCCTTCAAAAAGAAATTTGCCTGCAATGGGACAGTGATCGAGCACCCGGAGTATGGAGAGGTGATTCAGCTACAGGGAGACCAGAGGAAGAATATCTGTCAGTTTCTGCTAgagATCAACATTGTAAAAGAGGAGCAGTTGAAGGTTCACGGTTTTTAAAAGGGGGGGCTGTTTTCTACAGGACTGCACCAGCATGTAGCAATCCTAGTACATTCATGGCAGGGTTTTTGTGACCATATGCTAACAACACTGACAGCAGGGTAAAAACtgtttgggtttttttttttttttgcagttgtttCAAGCTCGAATCTTCATAATGACCTCAACCGGACCACTAATTCCAGGCTGGTCTGGATTAGATACTGAATATTTGTTGATGCTTGTGAACGTTTTATGATAGATACACTCAACTGCATGATCTTTTTACCAAGGACAATAAAATGTATGTGACTTTGC

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0043024 ribosomal small subunit binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1109 Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

Ensembl:

ensembl_id ENSDARG00000029445

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046608 False 896 mRNA 0.43 4 32517915 32522655
TCONS_00046609 True 784 mRNA 0.44 5 32517916 32522587

Neighbor

gene id symbol gene type direction distance location
XLOC_023576 itprid1 coding downstream 65560 32414643 ~ 32452355 (-)
XLOC_023575 NA coding downstream 109511 32406894 ~ 32408404 (-)
XLOC_023574 NA coding downstream 154553 32362433 ~ 32363362 (-)
XLOC_023573 trdmt1 coding downstream 321503 32151629 ~ 32196412 (-)
XLOC_023572 cubn coding downstream 367639 32035759 ~ 32150276 (-)
XLOC_023578 PTCHD3 coding upstream 37740 32560395 ~ 32563875 (-)
XLOC_023579 rdh12l coding upstream 50825 32573480 ~ 32582880 (-)
XLOC_023580 ca2 coding upstream 127572 32650227 ~ 32665283 (-)
XLOC_023581 NA coding upstream 184786 32707441 ~ 33221175 (-)
XLOC_023582 nrbp2b coding upstream 703676 33226331 ~ 33276139 (-)
XLOC_023665 dre-mir-735 misc upstream 5655306 38177961 ~ 38178027 (-)
XLOC_023567 CT737162.3 non-coding downstream 731338 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 761564 31755247 ~ 31756351 (-)
XLOC_023565 NA non-coding downstream 800434 31709501 ~ 31717481 (-)
XLOC_023587 NA non-coding upstream 1027207 33549862 ~ 33670492 (-)
XLOC_023594 NA non-coding upstream 1312169 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 1534624 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 1590101 34112756 ~ 34115514 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_03399450_03399994 EIF1B, EIF1 coding CI01000082 null 3399172 ~ 3399994 (-)