XLOC_023578 (PTCHD3)


Basic Information

Item Value
gene id XLOC_023578
gene name PTCHD3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 32560395 ~ 32563875 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046610
ATGATGTTACACATTGGAGTCCCTTTTGTCATGACAGTTGCTAATTCTCCATTCCTAATATTAGGGATTGGAGTAGACGACATGTTCATCCTCATCTCCTGTTGGCAGCAGACGAATGTTCACGATCGAGTGGAGACTCGCCTGTCTAATACATACAAAGAGGCGGCCATTTCAATCACCATCACCACTCTCACAGACGTACTCGCTTTCTACATCGGCCTCATGACGCCTTTCCGCTCCGTCCGCTCTTTTTGCCTGTACACCAGCACCTCCATCCTTTTCTGCTACATCTACAGCATCACTTTTTTTGGAGCGTTCCTCGTCCTTAACGGACGGCGGGAGAACAGCAACAAGCACTGGCTGACCTGCAAAGAAGTACCCGAAGAGTGTGCTGTAGGACAGTCAAAATGGTACGAATTATGTTGCATTGGAGGAGCTTACGACCGCCATACTGGCTCAGAGGAGGTCCAACCCATGAATCACTTCTTCAAAAAATACTACGGCCCATTTCTGACCAAATCCTGGACGAAGGTGTTTGTGATCGTCTTTTATTGCATCTATTTAATCGTCAGCATTTACGGCTGCTTTCAGATTCAGGAAGGAATCGATCTCCGCAATTTGGCGGCTGACGATTCCTACGTGGTAAAATACTACGATAACGAGAAGGCGTATTTTTCCGAATACGGCCCAAACATCATGGTTGTCATCCGACAGGAATTTCCATACTGGGATGAAAAGTACATGTCGGATCTAGAAACCTGCATCGAAGACTTCAAAAACTTATCCTTCATCGAAAAGGACATATTCACGTCCTGGATTAAATCCTACAAGTACTACGGATATCACACGAAGCTCAATCTGAGCGCAGAAGACGTCTTCAAAGAGAATTTGGGAACGTTTCTACGGTTTTACTCTGATTTCAAACAGGACGTTAACTTCACCAACAACTCCATCCACGCGTCCCGGTTTTTCATACAGACCGTAAACATCTCCACTGCCCTGGATGAAATGAACATGTTAAATAAACTACGAGACACTGCCCAAAAGTGCCCTGTTCCCTTATTGGTGTACCACCCTGCCTTCATTTACCACGACCAGTATGCGGTCATAGTCACCAACACCATCCAAAACATTGCGGTTACCACAGCCGTGATGCTTCTGATCTCCCTTCTCCTCATCCCGAATCCTCTGTGCTCCCTTTGGGTCACTTTCTCCATTGCATCCGTCATCGTCGGAGTCACTGGGTTCATGGCGTTATGGGATGTCAACTTGGACACCATTTCCATGATCATTCTTGTCGTCTGCATTGGGTTCTCCGTAGACTTTTCTGCTCATATTTCATATGCCTTTGTATCCAACAAGAAGCCCAGTGCGAACGAAAAAGCAGTGGAGGCTTTGTTTAATTTAGGATACCCCATTTTGCAGGGTGCTGTGTCCACTATTCTTGGGGTGGTTGTCTTGTCTGCGTCCAAGAATTACATTTTTAGGactttctttaaaattatgtTCTTGGTCATCTTCTTTGGGCTCTTCCATGGTTTGACTTTCATCCCTGTTTTCTTGACCTTCTTTGATATGTGTAACGGAACGCCGGCTGAAAACAAATCAGGCCCGGAAGAGCAAGCCATGAAGAAGAGTTACACCAATAACATTGCTAAGGATGGTGACGTGAAAGAGCGGGAAATATATGACAATCACACTTTCCAATCTGACAACCATCAAACATGTCCGTCTCAGCCCTGCTCTGATATATGGATGATAGCCGGAAATAATCATAGTGTGCAGGATAATCACGTGTGCTTGGCGAGCACTGTCCCAATGTTCAGAGTTGACGGTCAGACCTATGAGGTTCACATGTATGAACCGTCCGATGATGTCATGTTAAAAGTCAACTGTCAATCAAAACAGCGTGTCGAAGGACAAAATTGTGTTTCGGGAAACAGCAACCACATTCAAGATTCAGGTCTTCCTACTCCTAACTGTTCCGAGTTGACCATTTTGTAA

Function

symbol description
ptchd3 Predicted to be located in sperm midpiece. Predicted to be active in membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000010075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046610 True 2004 mRNA 0.45 2 32560395 32563875

Neighbor

gene id symbol gene type direction distance location
XLOC_023577 eif1b coding downstream 37740 32517915 ~ 32522655 (-)
XLOC_023576 itprid1 coding downstream 108040 32414643 ~ 32452355 (-)
XLOC_023575 NA coding downstream 151991 32406894 ~ 32408404 (-)
XLOC_023574 NA coding downstream 197033 32362433 ~ 32363362 (-)
XLOC_023573 trdmt1 coding downstream 363983 32151629 ~ 32196412 (-)
XLOC_023579 rdh12l coding upstream 9605 32573480 ~ 32582880 (-)
XLOC_023580 ca2 coding upstream 86352 32650227 ~ 32665283 (-)
XLOC_023581 NA coding upstream 143566 32707441 ~ 33221175 (-)
XLOC_023582 nrbp2b coding upstream 662456 33226331 ~ 33276139 (-)
XLOC_023583 zgc:195173 coding upstream 715779 33279654 ~ 33285003 (-)
XLOC_023665 dre-mir-735 misc upstream 5614086 38177961 ~ 38178027 (-)
XLOC_023567 CT737162.3 non-coding downstream 773818 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 804044 31755247 ~ 31756351 (-)
XLOC_023565 NA non-coding downstream 842914 31709501 ~ 31717481 (-)
XLOC_023587 NA non-coding upstream 985987 33549862 ~ 33670492 (-)
XLOC_023594 NA non-coding upstream 1270949 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 1493404 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 1548881 34112756 ~ 34115514 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000082_03420930_03425791 PTCHD3A coding CI01000082 null 3420341 ~ 3425890 (-)