G444788


Basic Information

Item Value
gene id G444788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79802412 ~ 79802989 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU503347
TATTCTATGTGTATGCTTTTTAAAACTCTGATCTCGTTTCACACTCTCTGTGTATTTACTGTTTGATGTGTGTTTCTCCTTTCTGGAAACTTTATCTGTAGAGTTGACTGTCGATCGGACATTAGGTCTCACCCGTACAACTATCTGTTGTGTCTTAGGAGATATTAACTTTAAAAGTCCTATCTTCACTCCGCTATATTAggcttccctctcttccttttcaGACTTTATTTCAGTATTAAATAGGTTAAGTTATCTTGTTTGCATAGAATGACCTTCCTTTCTCACCAAGCCTAGTTTATATCCTCACTTAGGACTGTATTTAGGTATGTGTTTTGAATTGGGTCTATGGCTAATTTACCGCATGTCAATTAACCATAAGTTCTCCTGTTTGTACAAAATGACCATCCTATCTAACAACACCTATTTAATATCCCTTCCTTCCGTTATTTTTATTTGTGGTAGTGCACCCTACCTCAGGTTTTTTTGGACCTTCCTTTCTTCCTATCGATTTTGGTTAAACTACAAAGTAGGAACCTAGTGGATCTGTTTAGAATAATTAAGCACCTATTATTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU503347 True 578 lncRNA 0.36 1 79802412 79802989

Neighbor

gene id symbol gene type direction distance location
LOC118964535 NA coding downstream 195587 79536584 ~ 79606825 (-)
cdh2 LOC106560349 coding downstream 342905 79385540 ~ 79459507 (-)
LOC118964780 NA coding downstream 508027 79294259 ~ 79294385 (-)
LOC118964722 LOC106584191 coding downstream 519821 79243247 ~ 79282591 (-)
LOC110524635 LOC106560345 coding downstream 575773 79219153 ~ 79237461 (-)
LOC110524638 LOC106560389 coding upstream 62188 79865177 ~ 79896739 (-)
b4galt6 LOC106560385 coding upstream 185137 79988126 ~ 80016243 (-)
LOC110524643 LOC106560384 coding upstream 272707 80075696 ~ 80166743 (-)
LOC118964650 LOC106581256 coding upstream 389396 80192385 ~ 80197919 (-)
LOC118964651 LOC106581256 coding upstream 405423 80208412 ~ 80210788 (-)
G444780 LOC100194703 non-coding downstream 3139 79798987 ~ 79799273 (-)
G444769 NA non-coding downstream 8705 79793501 ~ 79793707 (-)
G444731 NA non-coding downstream 38763 79763361 ~ 79763649 (-)
G444705 NA non-coding downstream 54155 79748041 ~ 79748257 (-)
G444583 NA non-coding downstream 158868 79643311 ~ 79643544 (-)
G444791 NA non-coding upstream 488 79803477 ~ 79803730 (-)
G444794 NA non-coding upstream 1809 79804798 ~ 79805182 (-)
G444797 NA non-coding upstream 3522 79806511 ~ 79806824 (-)
G445055 NA non-coding upstream 106171 79909160 ~ 79909360 (-)
G445070 NA non-coding upstream 122805 79925794 ~ 79926468 (-)
G444691 LOC106605670 other downstream 70876 79730987 ~ 79731536 (-)
G444001 NA other downstream 836383 78964631 ~ 78966029 (-)
G442807 NA other downstream 1720402 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 2175198 77623299 ~ 77627214 (-)
G445115 NA other upstream 179472 79982461 ~ 79987704 (-)
G445197 NA other upstream 373773 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 422486 80223240 ~ 80233361 (-)
G445220 NA other upstream 442954 80245943 ~ 80261505 (-)
G446775 NA other upstream 2140296 81943285 ~ 81943611 (-)

Expression


Co-expression Network