G445074


Basic Information

Item Value
gene id G445074
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79932101 ~ 79936292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU503658
GAGCTTTATTGAAGCTGTAAcatttaaaataatgtctctttTACAAACCAAAATAGAAACATTACTTAAGAGTGAGTGTTCCAGAGACGTTTCAGTAGATAAAAGCCTGATTGGACTGTGACTCATGTCAAAACCTTAAGGGATAGCGTACTATAATTGTTATTTATATAATAGACTTGCTTCAAAAGTGTTGTATATAATTAATGTATCGGACACTCCTAACTTCAGTCTAAATAACCAAAAGGACTTTGATCTCTAAATACAGTTGAGGTGAAACATTGGCTCGATGACATTTGGTTGATGAAATCAGATCAGACAGACCACAAAGACAGTGACTGTGCAGGAGGTCAGTAGTTTGTGTCTTCTTTTGCAATACAGCAATAGTTATTTATCTCAGTCGTCTCCTTTTTGCCAAACTTTCTCTGGAACAAACACGGCTAAGAAAAACTGTTTTCAGATATACCCAGCGTTTGACAAAATACATACCAGTGCATTTAATAGAAGAGTAACATAAAATAAACTATACAATGTTCCCCTCGTACTTTGAGAATTAGTAGATAGTCTTACACAAGTGGTAATAATTTCCCCCTCTTCCCATTCTTGTTAAAAACAAAATAGACCCTGATTGGATGAATCCATGTTTAGGTAACAGTCTGAGtgcatacacaaacacaacaaGGTATAAAAAAAAGTTACATAAAAATATGAGAATATTTgtacacaaaaacacaaacaacatAAAAATACTAAGACCCATCCTTAAGTACTATAACTGATGCAACTACAAGTATAGATTCAATCAAACCTGGATAAAATTAAAAGCTTTGGGGCATAGCTATTATACTTTGTTTCAGAATGAGCACCCAACAGTTAAGTGAGAAAAACTGTGTGACAATCTCAGTACTATTACATTGACAAACTCCAACTTCATGTTTTGAGCTTAAGACTGAAAAATGGAAGCACATTCTTCATGCTTCAAGCTCTGAGAACATGCTTGCTGCTTTTAGAAAGTCCAATTAATTACGTATACGTTAAATTCAGATCAAACAAAACCATCAAATAGTTACAATACAAGcagagacaaaaaaaaataataatatctaaACAAACCTGTCTAATCACTGAAATAACAAACATGGATGTGTATACCAGAGATGGGTGTAGAATATATAGGTTATAGCTCAGCCACTTCTGTTGTATCTCTTTGCCTATTGGCTATAGCTCATCCACTTCTGTCCTATGTGAGGCTTGCTCAGAGCCCTGCTCAGCGGGACTAGCAGGTTCCAGGTATAAGTTGCCAACAAGGTGCAGAATCTTAAACTGACTGGACAAGATGTCAGGGTTTGTATGGAAATGTACAGTCTAACATGCTCTTGGTGTGCATGGACAAGTCCCACAGACTGAAGAggaggtctgtgtgtgtatgtgtgccttcaTGCGCGTGTGGTGGGGGGCTGAGAGCCTGTCTCAGGGAGACGTGGGTGGAGATGTTCACATAGAATAACAGCAATCACACGTCTGTGGATGACAAACTCACACTAACAGCCAATAGAAAAACAAAAAAGCTTTAGATTTGTTTCGCATGTAAAGAAGTGCTCAATACTCAATTCAGTGCCCCTAATCAAAATCAGGTTGATCCTTGATGCTAATCAACAGAAATTAGGGTTGACCCCAATTATTTGACTGGTCGAATGTTTGGtagataggctgttggtcgaccaaggTTTTTTTCAGTTGAGCAGtagcaaatatatatttttatggcaCAGGACATGCCTGTCTTATTCGCGGCCATCTTAGTGAACTAATCTATTACAGAGGTCgcggggatggcacagtccaagaAGAAGGGGCATGTGGCTTCACAATGCACTTCTCTTTCCAGAACACCCTCTCTCCCgccaatttgtgcacattcattgtttcataacttcatagTATGAATTGTTGGCGTCTGATTGTTAGtgtctatcaattccccattacatatatcaccagtagtacatccAGTTAATTCCTataatttctaatctacaatgtttttttggtTACGGTAATGtgtgttaatgcattcaatataatTCCAGTATTTTACCTTTGTCAATGTCGGAGTGGTCACGTTGTTTGCAGAGcgcacaacctatgctacacttgtgagaaaccaGTTCTGGTTAATTTAATTATATTTATGAGTTTTGTCAATttagtcattgtcttttgtttggagcgcttctgtcaatgttgagtaaggacgtgCACCTGATTAcccatagaagtaggcctataggctacctggcctgcagGCACATGTAggcatataaatgtgcccatttggggatctgatagcaTTTCTGTTTGGCTTAACACACCACCACAATGACCtttggagcttctcaaagtaatattctcttcacctcaaacagcaagcaaacaaagtctgtttttacatccattgagaatgatgAACTATTgtcaatgtatttgaaaaatctttccagctctctaCCTTTCGATAAACACTCAGTgtgaaagggaaaaatgtcatgctctgatcagtggaaacatcataaaataggcctacctgattacttcttatcccttgcacaaatagcctacagGTGTGTctcattggctcgcaaaactctTGAGGGCccaatattttatacaatgtggCAAGGTTCTTCAGGCCagacccaagttaatagttgatacaatgtttcaagttcgttgcagacaggtcatgtgtagccaatgtgatttatgggatatttatttttatcaggatattttctacctgcaggctgcaatgtttttatttgttggctttataggCTCCTTTTACATAGTTAGCAATGGCAATAGAAGTAACTTTTTAGGttttgtatcattttcatttagatttggatATAATTTTGACTAACCACACGACAATGATTTTAAGATACAAAGATGTTAATATAAATGAAAACTGCTAcacaaaaatgtgcatatgaaaatcataactggcacacagatcagtagaaatggtaggataaatttGCATTCCACATGAGAAAGTTTGCTGACTCCTTGTGTAGCCTATTCCTGGCAAGTTCAGGACAGTAACATCAGAATCTGCGAAGGCCAGTTGGAGCgggaggaggatggtagggacaggcaacatttaaaaaaaattctggtTATCTTTATCCCTAGTTCCCTCTttagcatcagacaagctcaatgcatatatagttgatttgattaaaacacataggtCGTGTCTATAcatggaaaaatacacattttaaccaattgattggtcgaaagaacagacatCTTTCGGTCGACCAAGATTGTTTTTAGTAGAGGACATAAACACACATAATTTACTTAACAGCTAAAAAGAAGAATTACCATTGTCCCCCCAGAAGTTTAGAAAGTCAAATAAAGGTACCATATTGTGTTTGTACACACAAGAGGGAATCAAACAGTTCATTATTTCAGATGGAAGCTGAATCGTACTCACATgaaaacacacatgtacacactgccTGATAAAACTAAGGTGGGATGCTTTATAGGCCTGGCTGATAGAATTCGCTGTGCAAGCAGACACAAGGTTACAATCTGTAAAATATTCTGAACCTGCACATTTACACTTGCCCACTGCCACATTTTTTAAACAACAATCTAACACTTTCTCATTCTAAAACCCACTATACATCTAAGAATTATATGCTTTTCAGGGACAAAAAAATACACCCACCTTGACCACTGAATTGAAATCAAAACTTTCAAGGTGGTGACATTTCCATCCATAAATAACTTCAGTGGCATTTAATGTGTCTTGTGTTTATAGTATTATATTATTGGTCGAGACCTTATTTACTGGTGCTCTGGTTGGTCACAACTCTTTTCTCTATCACCGCCTTGCGGGAGGAGGATGCGGGGCCTACGCTGACCTTGCTGGAGGACCCGTTCAATCCTACAATGCCGCTCTGTGAGCCTGCGCTGGACTGTGCGGCTGAGCTCTGCTCTGTGGTGTAAAGGACTCTGTGTGAGCCAGAGAGGCCGTTCCTCTGCATGGACCCCTGGGAGAACCCTAACACCCCTCCCTGGCCTTTCTGCACCCCACTACCTCCGCTGCTACCCCCCTGTCCCTCCATCACCAGCATGCTCTGTGACCCTGATAAGCCCCCTCGCTGCAGGG

Function

NR:

description
PREDICTED: desmoglein-2-like isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU503658 True 4192 lncRNA 0.39 1 79932101 79936292

Neighbor

gene id symbol gene type direction distance location
LOC110524638 LOC106560389 coding downstream 35362 79865177 ~ 79896739 (-)
LOC118964535 NA coding downstream 325276 79536584 ~ 79606825 (-)
cdh2 LOC106560349 coding downstream 472594 79385540 ~ 79459507 (-)
LOC118964780 NA coding downstream 637716 79294259 ~ 79294385 (-)
LOC118964722 LOC106584191 coding downstream 649510 79243247 ~ 79282591 (-)
b4galt6 LOC106560385 coding upstream 51834 79988126 ~ 80016243 (-)
LOC110524643 LOC106560384 coding upstream 139404 80075696 ~ 80166743 (-)
LOC118964650 LOC106581256 coding upstream 256093 80192385 ~ 80197919 (-)
LOC118964651 LOC106581256 coding upstream 272120 80208412 ~ 80210788 (-)
LOC118964652 LOC106581256 coding upstream 274892 80211184 ~ 80213484 (-)
G445070 NA non-coding downstream 5633 79925794 ~ 79926468 (-)
G445055 NA non-coding downstream 22741 79909160 ~ 79909360 (-)
G444797 NA non-coding downstream 125277 79806511 ~ 79806824 (-)
G444794 NA non-coding downstream 126919 79804798 ~ 79805182 (-)
G444791 NA non-coding downstream 128371 79803477 ~ 79803730 (-)
G445086 NA non-coding upstream 12961 79949253 ~ 79949580 (-)
G445103 NA non-coding upstream 32032 79968324 ~ 79968599 (-)
G445104 NA non-coding upstream 32886 79969178 ~ 79969484 (-)
G445107 NA non-coding upstream 34686 79970978 ~ 79971212 (-)
G445108 LOC106560363 non-coding upstream 36087 79972379 ~ 79972671 (-)
G444691 LOC106605670 other downstream 200565 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 694640 79219153 ~ 79237461 (-)
G444001 NA other downstream 966072 78964631 ~ 78966029 (-)
G442807 NA other downstream 1850091 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 2304887 77623299 ~ 77627214 (-)
G445115 NA other upstream 46169 79982461 ~ 79987704 (-)
G445197 NA other upstream 240470 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 289183 80223240 ~ 80233361 (-)
G445220 NA other upstream 309651 80245943 ~ 80261505 (-)
G446775 NA other upstream 2006993 81943285 ~ 81943611 (-)

Expression


Co-expression Network