G445115


Basic Information

Item Value
gene id G445115
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 79982461 ~ 79987704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU503705
TATGTCACTCGTGTGCTTTCATCACGACAGCCGTGGTAGTGTAGGAGAAGGGACTCAGCAACAGGGCCAGAGTGTAGTGGCGATGTCCCTCCGCGTGGGCCTCGAACACCACTTCAGCAGTCTCGTGGAAAGGTGTGGTTCCCTGAGACTTCCAGTAGGCTTTAGTGTCAAACTCAACTCGGTACACCCCCGACTGGAAGTCCTGATCTGAGATCAGATTATGGACTTCCCCTGTCAAGTCTGTCACtCCACTAGCAACCTGTGCCCAGGTCATTCCATTGACTCGTCGGGAGACACTCAGTGCCACGGCGCCCGCTGGTACACCCTTCACCGCATCCAAAATCTTAACCATCAACGGGCAGTGAGTGTCTGACTCACCATGCCTGTCCTGGACCCCAAACACTGGGGCGGCGCTACAGAGTAGGACAGCAGTGGCTAGCAGCACACAGAGCAGTGAACTGTCCATTTGGAGCGATAACTGGTTGGCGGCTCTAACACAGTCAAACCTATAAACTTAGACTGACAGGCATAGAATTGGGCAACACACCCCTATCTGGTACCTTTATAcactgaatccc
>TU503706
CTTGGTTATTAACTCAGCATTATCATTAGGTTGTCAAAAGGCCAAAACAGAAAGAGATGTCATACATAGAGAAATAACTAAGACAATACatagttgaattcggaagtttagccaaatacatttaaacattgtttttcacaattcctgacattttaatcctagtaaaaattccctggtttaggtcaattaggatcactttattttaagaatgtgaaatgtcagaagttatttcagcctttatttctttcatcacattctcagtgggtcagaagtttacatacactcaattagtatttggtagcattgccttttaaattgtttaacttgggtcaaacatttcgggtagccttccacaagcttccctcaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacatgacttttcagttctgcccacaaattttctatgggattgaggtcaggggtttgtgatggccactccaacaccttgaccttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgttcatttggaaaacccatttgcaaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacattttcctgtctcgtgatgccatctattttgtcaagtgcaccagtccctcctgcagcaaagcacccccacaacatgaagcacgggggtggcagcatcatgtttgggatggtgttcttcagcttgcaagcatccccatttttcttccaaacataaatggtcattatggccaaacagttctatatttgtttcatcagaccagaggacatttctccaaaaagtatgatctttgtcttcatgtgcatttgcaaactgtatggaggttttggagcagtggcttcttccttgctgagcggcctttcaggttatatcgatattggactcgttttactgtggatacaaataattttgtacctgtttcctccagtatcttcaaggtcctttgctgttctgggattaatttgcacttttcgaaaccaaagtacgttcatcactaggagacagaacgtgtctccttccggagtggtatgacggctgcctggtcccatggtgtttatacttgcgtactattgtttgtggtaccttcaggcgtttggaaattgctcccaaggatgaaacggACAACAAAAAaatttgaggtcttggctgatttcttttgattttcccaagatgtcaagcaaagaggcactgcgtttgaaggtaggcattgaaacacatccacaggtacacctccaattgactcaaattatgtaaattagcctatcagaagctactAAAGCCATGGAATCTGGatttttccatgctgtttaaaggcacagtcaactttagtgtatgtaaacttctgacccactggaattgtgatacacagtgaattttaagtgaaataatctgtttaagcaattgttggaaaaatgacttgtgtcatgcattaagtagatgtcctaaccaacttgccaaaactagtttaacaagaaatttgtggagtcgttgaaaaattagttttaatgacgccgacctaagtgtatgtagacttcaactgtacttaacAAGTTGCATTATACAGTAACTAGGCTTTAGGTATGTGCTACCCTTTGATTAACCTTCACCACTATTCATTACCTTAGTTAACCTACACAGTAGCCTGTAGAAGGGATCTGAACTAATCCATGAATGTAAATTCTTCCGACAGGTGGCTGGTACTCATACAAGACCCTCGTCCTTCAGCAGATCAGTGCATACAGTTGTCACGCTATGTGTAGTTGGACAACGATGAATGTCTGGAATATGAGTATGTTGGTGAATGTGTGTGGCATTGTATGTTCAACAAAGGAAGGCCCAGTCAGTCGTTTACCTGCACTTTTATTTGTTAAGCTTGGTCAGGTGTGTATGTCACTCGTGTGCTTTCATCACGACAGCCGTGGTAGTGTAGGAGAAGGGACTCAGCAACAGGGCCAGAGTGTAGTGGCGATGTCCCTCCGCGTGGGCCTCGAACAACTTCAGCAGTCTCGTGGAAAGGTGTGGTTCCCTGAGACTTCCAGTAGGCTTTAGTGTCAAACTCAACTCGGTACACCCCCGACTGGAAGTCCTGATCTGAGATCAGATTATGGACTTCCCCTGTCAAGTCTGTCACtCCACTAGCAACCTGTGCCCAGGTCATTCCATTGACTCGTCGGGAGACACTCAGTGCCACGGCGCCCGCTGGTACACCCTTCACCGCATCCAAAATCTTAACCATCAACGGGCAGTGAGTGTCTGACTCACCATGCCTGTCCTGGACCCCAAACACTGGGGCGGCGCTACAGAGTAGGACAGCAGTGGCTAGCAGCACACAGAGCAGTGAACTGTCCATTTGGAGCGATAACTGGTTGGCGGCTCTAACACAGTCAAACCTATAAACTTAGACTGACAGGCATAGAATTGGGCAACACACCCCTATCTGGTACCTTTATAcactgaatccc
>TU503707
TATGTCACTCGTGTGCTTTCATCACGACAGCCGTGGTAGTGTAGGAGAAGGGACTCAGCAACAGGGCCAGAGTGTAGTGGCGATGTCCCTCCGCGTGGGCCTCGAACACCACCTGTACACACGGCACATCAGTTTGTACTGCTGTTTTACTTCTATGAATTCTCTCCCACAGACTGACATCCAGGAAGACCGATTTACTTTTGTCCAACTAGGTCTATGAACTCTTTCCACTTAGGACAAATTATTTCCATTGAGGACAAACATTGTAGAGTAGCAAACAAAAAGCTATTGATACAGGTCAAAGCCAGTGTGCTATCGCAAGCAATTTAATCACATGATGTTCCATAATTCATAATGGAAGGGGGGAAATTGTCACattctgttattttcttttcCCTTTAACCAGCTAATTATTTTGTCTCAGATTTTTAGGTCCAAATGTTTATGGTTTGTCTTACTTTCCATGGTGAGTATTATTTTATCTATGGGGAACAACTGGTGTAGTTCTAGATGTAATCTAGTCTTTAGGCACATTACTGAGTTACAAATGTCCACTGTCTGGCCTACTACACACTGGTTGTACacaaggttctacatggaaccaaaaagggttttcctTTGGAGACAGCCGTAGAACCttttttggaacctttttttctaagagtgtactgtagtacatcatgcaACACAACCTTAGTTTGTACTAGGTCTCAGAGCAGTGAGAGGGTTAAAGGTTGGTGATTGTACTCACTTCAGCAGTCTCGTGGAAAGGTGTGGTTCCCTGAGACTTCCAGTAGGCTTTAGTGTCAAACTCAACTCGGTACACCCCCGACTGGAAGTCCTGATCTGAGATCAGATTATGGACTTCCCCTGTCAAGTCTGTCACtCCACTAGCAACCTGTGCCCAGGTCATTCCATTGACTCGTCGGGAGACACTCAGTGCCACGGCGCCCGCTGGTACACCCTTCACCGCATCCAAAATCTTAACCATCAACGGGCAGTGAGTGTCTGACTCACCATGCCTGTCCTGGACCCCAAACACTGGGGCGGCGCTACAGAGTAGGACAGCAGTGGCTAGCAGCACACAGAGCAGTGAACTGTCCATTTGGAGCGATAACTGGTTGGCGGCTCTAACACAGTCAAACCTATAAACTTAGACTGACAGGCATAGAATTGGGCAACACACCCCTATCTGGTACCTTTATAcactgaatccc

Function

NR:

description
transthyretin

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU503705 False 578 lncRNA 0.54 4 79982461 79985724
TU503706 False 2556 TUCP 0.43 4 79982461 79987704
TU503707 True 1217 lncRNA 0.46 3 79982461 79985724

Neighbor

gene id symbol gene type direction distance location
LOC110524638 LOC106560389 coding downstream 85722 79865177 ~ 79896739 (-)
LOC118964535 NA coding downstream 375636 79536584 ~ 79606825 (-)
cdh2 LOC106560349 coding downstream 522954 79385540 ~ 79459507 (-)
LOC118964780 NA coding downstream 688076 79294259 ~ 79294385 (-)
LOC118964722 LOC106584191 coding downstream 699870 79243247 ~ 79282591 (-)
b4galt6 LOC106560385 coding upstream 2402 79988126 ~ 80016243 (-)
LOC110524643 LOC106560384 coding upstream 89972 80075696 ~ 80166743 (-)
LOC118964650 LOC106581256 coding upstream 206661 80192385 ~ 80197919 (-)
LOC118964651 LOC106581256 coding upstream 222688 80208412 ~ 80210788 (-)
LOC118964652 LOC106581256 coding upstream 225460 80211184 ~ 80213484 (-)
G445110 LOC106560363 non-coding downstream 7889 79974214 ~ 79974572 (-)
G445108 LOC106560363 non-coding downstream 9790 79972379 ~ 79972671 (-)
G445107 NA non-coding downstream 11249 79970978 ~ 79971212 (-)
G445104 NA non-coding downstream 12977 79969178 ~ 79969484 (-)
G445103 NA non-coding downstream 13862 79968324 ~ 79968599 (-)
G445117 NA non-coding upstream 15556 80001280 ~ 80001644 (-)
G445118 NA non-coding upstream 34884 80020608 ~ 80023313 (-)
G445120 NA non-coding upstream 38881 80024605 ~ 80024815 (-)
G445122 NA non-coding upstream 41480 80027204 ~ 80027482 (-)
G445127 NA non-coding upstream 50981 80036705 ~ 80036919 (-)
G444691 LOC106605670 other downstream 250925 79730987 ~ 79731536 (-)
LOC110524635 LOC106560345 other downstream 745000 79219153 ~ 79237461 (-)
G444001 NA other downstream 1016432 78964631 ~ 78966029 (-)
G442807 NA other downstream 1900451 78081745 ~ 78082010 (-)
G442381 rpl5 other downstream 2355247 77623299 ~ 77627214 (-)
G445197 NA other upstream 191038 80176762 ~ 80177080 (-)
LOC118964653 LOC106581256 other upstream 239751 80223240 ~ 80233361 (-)
G445220 NA other upstream 260219 80245943 ~ 80261505 (-)
G446775 NA other upstream 1957561 81943285 ~ 81943611 (-)
G447220 NA other upstream 2404931 82390655 ~ 82391224 (-)

Expression


Co-expression Network