XLOC_023587


Basic Information

Item Value
gene id XLOC_023587
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 33549862 ~ 33670492 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047228
CCTGTAGGTCATTACTCTGTTCACGATTCTTGATCCAGATCTTGCCTTGGCCCTGTGGATCAATCAGCAAAGGATAACGAGAAGCTTTTGTCACGATGATGCCATTCTGAATGGACAGGTCATCATTGGGGAGACCCTGCAGGTTCCATTCTCCTATAGTGGCGTTATCCACCAGCATATTGATCAGATTCAGGTTCTGCAGGGAAAACCATTGTATACGATGTAAAAGCTGTAAAAACAAGCTTGAATATATgactgattttggtgacacttcacTTGAAGAGGTCATAAACATGATTGACATCAGTGCATAATAATTGTCCTAAATATTTTTCACTTCTTCACTGGAACAAGCTATATTTTTCATTCAAATGTCTCATTAAAGGGGTCATTACTCTGTTGAATCATTTCTTTAGAGttccattaatatttaatgacattgaTGAAAAATGTAGCACTGTAATCGGaggt

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0042738 exogenous drug catabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0046906 tetrapyrrole binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047228 True 471 lncRNA 0.38 2 33549862 33670492

Neighbor

gene id symbol gene type direction distance location
XLOC_023586 si:ch73-173p19.2 coding downstream 88549 33439243 ~ 33461313 (-)
XLOC_023585 slc4a2b coding downstream 159669 33301129 ~ 33390193 (-)
XLOC_023584 si:ch1073-406l10.2 coding downstream 258078 33288455 ~ 33291784 (-)
XLOC_023583 zgc:195173 coding downstream 264859 33279654 ~ 33285003 (-)
XLOC_023582 nrbp2b coding downstream 273723 33226331 ~ 33276139 (-)
XLOC_023589 si:dkeyp-87a6.2 coding upstream 19818 33690310 ~ 33693070 (-)
XLOC_023590 cavin4b coding upstream 26638 33697130 ~ 33703504 (-)
XLOC_023591 tmeff1b coding upstream 38312 33708804 ~ 33756003 (-)
XLOC_023592 cdk5 coding upstream 97279 33767771 ~ 33780387 (-)
XLOC_023593 abcb8 coding upstream 110993 33781485 ~ 33801668 (-)
XLOC_023665 dre-mir-735 misc upstream 4507469 38177961 ~ 38178027 (-)
XLOC_023581 NA non-coding downstream 328687 32707441 ~ 33221175 (-)
XLOC_023575 NA non-coding downstream 1141458 32406894 ~ 32408404 (-)
XLOC_023574 NA non-coding downstream 1186500 32362433 ~ 32363362 (-)
XLOC_023567 CT737162.3 non-coding downstream 1763285 31786463 ~ 31786577 (-)
XLOC_023566 NA non-coding downstream 1793511 31755247 ~ 31756351 (-)
XLOC_023594 NA non-coding upstream 164332 33834824 ~ 33839361 (-)
XLOC_023596 NA non-coding upstream 386787 34057279 ~ 34069758 (-)
XLOC_023597 CT583690.1 non-coding upstream 442264 34112756 ~ 34115514 (-)
XLOC_023600 NA non-coding upstream 1192548 34863040 ~ 34863601 (-)
XLOC_023601 NA non-coding upstream 1213409 34883901 ~ 34949036 (-)

Expression


Co-expression Network