G447878


Basic Information

Item Value
gene id G447878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83102101 ~ 83119406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU506876
AAAATATGGTGCATAATGAGGGTAAGAAACTCTTCTGGATCTGAACaagaacacaaccacacacagacacactcagtcCTTTCAAAAATCATCCTATTAAGTCTAGTTCATTTACAGTTGCGACTGTCCTGTTAGAAAGCCTATAGCAGTAAGGCAGATGTTTGTTCACCTTTCTCCTCTGTGGTGAATGTGTGGCAGTATCCAAGCTCCTGCAGCTGCTGACGAAGCTTCATAATGTGTCTCCCTTCCACAAAACCTTCACTACACGtagacatcaatacacacatgcaAAACATGTATTAGCACCCCCAAGCCTACAATTACTACACCTCctaagcgcacacacacacacacacacgcgctggCTGACCTGCGGAGCGGGTTGACGATGTCATGTAGCAGGGTACTCTGGATGGGGGCATCCCTAGGCTCTGTTGACTTAAACAGCAGGGAGTCCAACACTGAGGAACAGGAGaacagactggagagagagagatatagagagagtgagagacagacagagtgagagatatagagagagtgagagatatagagagagtgagagatatagagagagtgagagagacagacagagagcgagagagcgagacagtgcgagtgtgagtgagagagacagagagcaagacagagagcgagggagagtgagagagagcgtgagacagagagtgagacagagcaagtgagagagcaagagagcgagacagtgcgagtgagagagacagagagcaagacagagagcaagtgagagatagacagagcgagagacagagtgggagagagagagcgagacagagtgaacgagacagagcgagtgagacagagagcaagacagagagcgagacagagcgagtgagacagagagcgagtgagacagagcgagagagagagacagaaagagcgagagagagcaagtgagaaagagcgagtgagacagagcgagtgagacagagcgagagtgagacagagcgagagtgagacagagcgagagagagacagagcgagagagagacagagcgagagagagacagagcgagagagagacagagcgagagagacagagcgagagagacagagcgagcgagacagagcgagtgagacagagcgagtgagtgagagacagagcgagtgagtgagagacagagcgagtgagtgagagacagagcgagacagagcgagtgagacagagcgagtgagacagagcgagtgagacagagcgagtgagacagagcgagtgagacagagcgagtgagacagagcgagagagacagagcgagagagagacagagcgagagagagacagagagagagagagacagagcgagcgagagacagagcgagagagagacagagcgagagagagacagagcgagagagagagagcgagagagagacagagagcgagagagagacagagcgagagagagagcgagagggacagagcgagagggagacagcgagagtgagacagagcgagagtgagacagagcgagagtgagacagagcgagagggagacagagtgagagagagacagagcgagagggagacagagcgagagagagacagagcgagagagacagagcgagagtgagagagcgagagagagacagagcgagtgtgagacagagcgagtgtgagacagagcgagagtgtgtTTTATAGGAGCAGGGAGGAGCTGTTAGTGTGCCTATCATTTAATTTCCTCTTTATAAACAATATATAttgtcatcatcttcatcatatTCACCTGAAGAGGGCGGAGTCCATGTAGCAAGAGTTTATATGGCCCTGGATCCCCTTCATTCGACCAATCAGCATCCTCTCGACCTGGTCAGAGGcgatgggggaggaggggagcgCCCCAGGGCTGCGCAACGCCTGTCTC

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase CYLD-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU506876 True 1904 lncRNA 0.52 5 83102101 83119406

Neighbor

gene id symbol gene type direction distance location
LOC110524678 LOC106560415 coding downstream 5038 82981449 ~ 83097063 (-)
LOC110524677 mafa coding downstream 127512 82966984 ~ 82974589 (-)
si:ch211-191a24.4 LOC106560402 coding downstream 496417 82601460 ~ 82605684 (-)
si:ch211-191a24.3 LOC106560396 coding downstream 565778 82433215 ~ 82536323 (-)
igfbp3 igfbp-3a1 coding downstream 755417 82275087 ~ 82346684 (-)
adcyap1r1b adcyap1r1 coding upstream 121801 83241207 ~ 83306242 (-)
LOC110524681 LOC106560421 coding upstream 465330 83584736 ~ 83599722 (-)
LOC110524682 LOC106560471 coding upstream 515901 83635307 ~ 83661963 (-)
LOC110523023 NA coding upstream 679410 83798816 ~ 83800505 (-)
LOC110524685 LOC106560426 coding upstream 684894 83804300 ~ 83825460 (-)
G447866 NA non-coding downstream 13747 83088110 ~ 83088354 (-)
G447833 NA non-coding downstream 80652 83018118 ~ 83021449 (-)
G447797 NA non-coding downstream 174832 82926957 ~ 82927269 (-)
G447794 NA non-coding downstream 179073 82922826 ~ 82923028 (-)
G447789 NA non-coding downstream 184012 82917874 ~ 82918089 (-)
G447883 NA non-coding upstream 70 83119476 ~ 83119843 (-)
G447872 NA non-coding upstream 2668 83122074 ~ 83125934 (-)
G447956 NA non-coding upstream 109961 83229367 ~ 83232057 (-)
G447959 NA non-coding upstream 113387 83232793 ~ 83233048 (-)
G447960 NA non-coding upstream 114918 83234324 ~ 83235592 (-)
G447220 NA other downstream 710877 82390655 ~ 82391224 (-)
G446775 NA other downstream 1158490 81943285 ~ 81943611 (-)
G445220 NA other downstream 2840596 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 2875900 80223240 ~ 80233361 (-)
G445197 NA other downstream 2925021 80176762 ~ 80177080 (-)
G447993 NA other upstream 198107 83315161 ~ 83319715 (-)
G448079 NA other upstream 390947 83510353 ~ 83520273 (-)
G448411 NA other upstream 752196 83871602 ~ 83873308 (-)
G448452 NA other upstream 796730 83916136 ~ 83916641 (-)
G450676 NA other upstream 2223382 85342788 ~ 85343072 (-)

Expression


Co-expression Network