G448071


Basic Information

Item Value
gene id G448071
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 83466201 ~ 83517728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU507127
tgtgtctaccacatcagtattgtgtctcccacatcagtattgtgtctaccacatcagtgttgtatctcccacatcagtattgtgtctcccacatcagtgttgtatctcccacatcagtgttgtatctcccacatcagtatttTGTCTcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtattgtgtctaccacatcagtggtgtgtctaccacatcagtattgtgtctcccacatcagtattgtgtctcccacatcagtattgtgtctaccacatcagtgttgtgtctcccacatcagtattggtctaccacatcagtgttgtatctcccacatcagtattgtgtctaccacatcagtattgtgtctcccacatcagtggtgtgtctaccacatcagtattttgtctcccacatcagtggtgtgtctcccacatcagtggtgtgtctcccacatcagtg
>TU507126
tatctaccacatcagtattgtgtctaccacatcagtggtgtgtctaccacatcagtattgtgtctcccacatcagtattgtgtctaccacatcagtgttgtatctcccacatcagtattgtgtctcccacatcagtgttgtatctcccacatcagtgttgtatctcccacatcagtatttTGTCTcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtattgtgtctcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtgttgtatctcccacatcagtgttgtgtctcccacatcagtgttgtgtctcccacatca

Function

NR:

description
Scavenger receptor cysteine-rich type 1 protein M130

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU507127 False 518 lncRNA 0.46 4 83466201 83517728
TU507126 True 394 lncRNA 0.45 4 83469448 83516866

Neighbor

gene id symbol gene type direction distance location
adcyap1r1b adcyap1r1 coding downstream 159959 83241207 ~ 83306242 (-)
LOC110524678 LOC106560415 coding downstream 369138 82981449 ~ 83097063 (-)
LOC110524677 mafa coding downstream 491612 82966984 ~ 82974589 (-)
si:ch211-191a24.4 LOC106560402 coding downstream 860517 82601460 ~ 82605684 (-)
si:ch211-191a24.3 LOC106560396 coding downstream 929878 82433215 ~ 82536323 (-)
LOC110524681 LOC106560421 coding upstream 67008 83584736 ~ 83599722 (-)
LOC110524682 LOC106560471 coding upstream 117579 83635307 ~ 83661963 (-)
LOC110523023 NA coding upstream 281088 83798816 ~ 83800505 (-)
LOC110524685 LOC106560426 coding upstream 286572 83804300 ~ 83825460 (-)
LOC110522893 LOC106560472 coding upstream 362753 83879999 ~ 83896988 (-)
G448062 NA non-coding downstream 2590 83463366 ~ 83463611 (-)
G448055 NA non-coding downstream 32973 83432857 ~ 83433228 (-)
G448012 NA non-coding downstream 63673 83387463 ~ 83402528 (-)
G448003 NA non-coding downstream 133400 83332165 ~ 83332801 (-)
G447993 NA non-coding downstream 147353 83315161 ~ 83319715 (-)
G448086 NA non-coding upstream 17988 83535716 ~ 83536317 (-)
G448163 NA non-coding upstream 35370 83553098 ~ 83553338 (-)
G448176 NA non-coding upstream 50545 83568273 ~ 83569049 (-)
G448210 NA non-coding upstream 124631 83642359 ~ 83648780 (-)
G448242 NA non-coding upstream 169204 83686932 ~ 83687169 (-)
G447220 NA other downstream 1074977 82390655 ~ 82391224 (-)
G446775 NA other downstream 1522590 81943285 ~ 81943611 (-)
G445220 NA other downstream 3204696 80245943 ~ 80261505 (-)
LOC118964653 LOC106581256 other downstream 3240000 80223240 ~ 80233361 (-)
G448411 NA other upstream 353874 83871602 ~ 83873308 (-)
G448452 NA other upstream 398408 83916136 ~ 83916641 (-)
G450676 NA other upstream 1825060 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 1927953 85443496 ~ 85472422 (-)
G450752 NA other upstream 1969114 85486842 ~ 85487158 (-)

Expression


Co-expression Network