G449378


Basic Information

Item Value
gene id G449378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 84551133 ~ 84554495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU508592
TGTTTGACCaaatgttgttattgttgttaccgTGACGCCCTCCTTCCAGATGGCAAAGGTCCATCCTCCCACGGTCAGAATGATGTCTTTAAAGAAGGGAGACCGACGAACAGTGTTCACCTGCCCATCATGGATTATAAACCGATGAGAGGGCTTGGCACCTGAAAAACATAGAGAagtagacagaaacagagagagagacagagagagagagagagtgtgcggttaaagttggcaaaaaacacacacatttctttcaacGGGGCCGGGCGGTGACATGGAGGAGCAGCTTAAgtccaccctcttcaacatatatatcaacgaattggcgagggcactagaacaatctgcagcacccggcttcaccctactagaatctgaagtcaaatgtctactgtttgctgatgatatggttcttctgtccacaaccaatgagggcctacagcagcacctagatcttctgcacagattctgtgaGACCTAGGCCCACACAGTATATCTCAgttagacaaaaataatggtgttccaaaaaaggtccagttgccaggaccacgaatacaacttccatctagacaccgttgtcCTAGAGctcacaaaaaactatacatacctcagcctaaaAATCAGCATCACAGGTAAtgtccacaaagctgtgaacgttctgagagacaaggcaagaagggccgtCTACgcaatcaaaaggaacataaaattcaacataccaattaggatctgtctaaaaatacttgaatcagtcatagagcccattgccctttatggttgtgatgtctggggtccgctcaccaaccaagacttcacaaaatgggacaaacaccaaattgagactgcatgcagaattctgcaaaaatatactCCATGtataatgtaaaacaccaaataatgcatacagagcagaattaggccgataccctctaattatcaaaatccagaaaagagacaaaTTCTACAACCaactaaaaggaagcaattcccaaaccttccataacaaagccattaacagcagagaaattaacctggagaagagtcccctaagtaTGCGGATACTGGGGCtctgtacacaaacacaaacagactccacagagccccaggacagcaacacaattagacccaaccaaatcatgagaaaacaaaaagataattactttgagaaagaatttacaaaaaaacggagaaaactagaatgccatttggccctaaacagagagtacacagtggcagaatacctgaccactgtgactgacccaaaattaaggaaatatttgactatgtacagactcagtgagcatagccttgccattGAAAAAGGCCactgaaggcagacctggctctcaagagactACCTGTTGgcacaagaaaagggaaaccagtgaagaacaaacaccattgtaaatacaacctatatttttatttatttattttcccttttgtactttaactatttgcaaatCATTCCAACTCTGTATGTAGACAtactatgacatttgaaatgtctttattcttttggaacttttgtaagtgtaatgtttactgttaatcttttactgtttatttcacttttgtttattatctacttcacttgctttggcaatgtaaacatatgtttcccatgctaatgaaccccttaaattgaattgaaattgaattgagagagagattacCCCAGTTCAACCACATAGGAGATGAGCCATATTGTCAGgcggtgggtgtagctggtgcatgaagtcaggcgcaggggagcagagatgagtgaacaaCGGACTTTACTCAAGAAAATAGCACAAGTAACAGTACCAATGTGCGAACGGTTGCTACAAAACACGGGTGAAAACAGCACCCGGACAAAACCAGCCGGAAATGTACAGGCATGAACAATAAACAATGACACACAAAGATATGGGGGAAAAAGAGAGTTAAATACATGACCAGTAATTGGGAGATGAAAACCCGGTGTGTGGGaaaacgagacaaaacaaatggaaaatggatcggcgatggctagaagaccagtgacgtcgaccgccgaacaaaCAAGGAGAAGCATCGACTCCGGCAGATGAGTCTGAGGtaggtatgtgtgtctgtgtctgaatgTTTCATCAAGATTTGAATCAACAGTGGTGCCATTTCCAAGGACCAATATCTTCCTATTGGGATACAGTAATAACGTTAAATATAAATAAACAGTCTACTGACCACTGGGAGCacatattatagtataataatgtCATTTCCCTTGGGAACCTTTTCCCCCTTTACCATTAACTAACATGAGGAACGTGCGTTATAGGGAGCAATTTACCATTAATGTACAAGCAAATAACCTTTGTCTACCCTGACGCTGTTGTGACACCAGACACAGTTTATTATTAAGTAATCACATTCCTGTGCCCTGCCAAAACAAGATGAGGGAACCAAGTTTAATCTCCTGTAATTGGTCATAAATTGCTGAATGGCTCAATACTTTAGTAGTGATACTATTGTAGTCTAGCAGCCATGATATTAAATCTATTTCCCAGACAGTAAATGCCTTGTTTTGTTTCTTGACTGCCTCAAATCTCTTGTGCTTAAACAAACTATGATTAGGAGGAGAATAGGAGATCCTGAAGGCATTGTTTGAGTCTCCATGGAATCTGTAGAGCAGTTACATTCATGATACTTAAGATATATGAAACAAGCAACCAATCTCCCTGATTACTCAGAGCTCTAGAGGTTTAGGAGATTATGTATTTTCCTTGGCTGTGAACCAACGAACGTGTTAACTGTAAGAGTATAGTTTAAATGATATTATAGATAGTCTCATTTATGATGATCTTACTGAACAGTCGTCCAGAGTCGTTGTCCTTCTCCAACTTCCAGTCTGTGTACACAAGCTCTCCATCCTGGTCCCTGCGTATAACCTGGTGCAGATGTCCTCCAGCGGTTTGAGTTGTTTGGCTGAAGGCACTCTGAGCAGGGCGTACTCTGGAGCAACCTCTGACCTCTCTGCATTCAGGTGGGCCCGGTCTGTCAGGGGTTAATAGGGGGAAGCACAGAGTGAGCAGTGTTGTTATGCAGTTAAACATCATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU508592 True 3087 lncRNA 0.42 2 84551133 84554495

Neighbor

gene id symbol gene type direction distance location
mcoln3b LOC106560446 coding downstream 19822 84520767 ~ 84531311 (-)
LOC110523024 fndc7 coding downstream 131811 84393650 ~ 84419322 (-)
henmt1 henmt1 coding downstream 158106 84389475 ~ 84393027 (-)
slc25a24 slc25a24 coding downstream 188440 84350936 ~ 84362693 (-)
LOC110524701 LOC106560440 coding downstream 201911 84326831 ~ 84349222 (-)
syde2 syde2 coding upstream 31526 84586021 ~ 84670458 (-)
LOC110524711 cssa10h1orf52 coding upstream 139100 84693595 ~ 84697943 (-)
ddah1 ddah1 coding upstream 155437 84709932 ~ 84862159 (-)
znhit6 znhit6 coding upstream 325508 84880003 ~ 84933122 (-)
LOC110524715 col24a1 coding upstream 379511 84934006 ~ 85175437 (-)
G449358 NA non-coding downstream 39918 84510903 ~ 84511215 (-)
G449352 NA non-coding downstream 43957 84504652 ~ 84507176 (-)
G449344 NA non-coding downstream 54671 84495986 ~ 84496462 (-)
G449341 NA non-coding downstream 58255 84492621 ~ 84492878 (-)
G449336 NA non-coding downstream 77296 84473577 ~ 84473837 (-)
G449380 NA non-coding upstream 6240 84560735 ~ 84561053 (-)
G449388 NA non-coding upstream 21476 84575971 ~ 84576211 (-)
G449394 NA non-coding upstream 22969 84577464 ~ 84577696 (-)
G449396 NA non-coding upstream 26463 84580958 ~ 84581711 (-)
G449400 NA non-coding upstream 39799 84594294 ~ 84594539 (-)
G448452 NA other downstream 634492 83916136 ~ 83916641 (-)
G448411 NA other downstream 677825 83871602 ~ 83873308 (-)
G448079 NA other downstream 1030860 83510353 ~ 83520273 (-)
G447993 NA other downstream 1231418 83315161 ~ 83319715 (-)
G447220 NA other downstream 2159909 82390655 ~ 82391224 (-)
G450676 NA other upstream 788293 85342788 ~ 85343072 (-)
lurap1 LOC106560455 other upstream 891186 85443496 ~ 85472422 (-)
G450752 NA other upstream 932347 85486842 ~ 85487158 (-)
G450957 NA other upstream 1323238 85877733 ~ 85878974 (-)
G451271 NA other upstream 1994343 86548838 ~ 86549878 (-)

Expression


Co-expression Network