G450367


Basic Information

Item Value
gene id G450367
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86559902 ~ 86560257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU509745
GTTATGTGGTTTTACAGAGAGTTATACTACTCTCCTCCTTCTCAACCAGAAAATGTGTGGTTTTAAGAGCAGAACAGTAGTGGCCTGTTTCCTCTGGGGGTCATACTGTCTTACCGTGGtcactctctgtccctgaccGTCCCCAGTACCTCCTCCTGCGCTCGGGGCTGTGGGTGTGTCTCTCAATCACCGCAGCAATAAACCGTGTGTTGCTGACTGCAGGACGGGACAGGAAAACATCTAGGTTTAATACAAGGAATAAAGACAAGGTCAAGTCAAGGTCTTACAGTACACTAATACTAATCCTCTTGCAGTACTTACTGATTCCCCTGTCTTCATGACTGTCCTCATCTCGC

Function

NR:

description
VWFA and cache domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU509745 True 356 lncRNA 0.48 1 86559902 86560257

Neighbor

gene id symbol gene type direction distance location
LOC118964680 NA coding upstream 190962 86364739 ~ 86368940 (+)
jak1 jak1 coding upstream 216518 86264428 ~ 86343384 (+)
LOC110524728 NA coding upstream 297750 86259980 ~ 86262152 (+)
LOC118964753 NA coding upstream 333957 86225891 ~ 86225945 (+)
LOC118964678 NA coding upstream 900994 85656730 ~ 85659355 (+)
si:dkey-148h10.5 LOC106560479 coding downstream 533777 87094034 ~ 87107836 (+)
dock7 LOC106560483 coding downstream 841513 87401770 ~ 87493654 (+)
kank4 kank4 coding downstream 961448 87520224 ~ 87666404 (+)
dmrt2b LOC106560523 coding downstream 1611502 88171759 ~ 88177340 (+)
fam183a LOC106560522 coding downstream 1701179 88261436 ~ 88263514 (+)
G450331 NA non-coding upstream 1450 86554473 ~ 86558452 (+)
G450366 NA non-coding upstream 5955 86553536 ~ 86553947 (+)
G450364 NA non-coding upstream 10398 86549023 ~ 86549504 (+)
G450362 NA non-coding upstream 11945 86547682 ~ 86547957 (+)
G450361 raver2 non-coding upstream 12737 86546927 ~ 86547165 (+)
G450369 NA non-coding downstream 394 86560651 ~ 86561005 (+)
G450371 NA non-coding downstream 2574 86562831 ~ 86563073 (+)
G450372 NA non-coding downstream 3577 86563834 ~ 86564050 (+)
G450373 NA non-coding downstream 4328 86564585 ~ 86564798 (+)
G450377 NA non-coding downstream 8962 86569219 ~ 86575598 (+)
G450333 NA other upstream 90965 86468538 ~ 86468937 (+)
G449809 NA other upstream 1112327 85445964 ~ 85447575 (+)
G449774 NA other upstream 1230960 85328572 ~ 85328942 (+)
LOC118964674 NA other upstream 2170301 84386803 ~ 84389601 (+)
G450394 NA other downstream 35890 86596147 ~ 86596515 (+)
G451408 LOC106584030 other downstream 283619 86843876 ~ 86844271 (+)
G451959 LOC106584028 other downstream 860547 87420804 ~ 87422836 (+)

Expression


Co-expression Network