XLOC_023635


Basic Information

Item Value
gene id XLOC_023635
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37046594 ~ 37049911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047250
caaggttcactgcgttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatatgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagtaaatagacattttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatct
>TCONS_00047251
gttcattgcgatcccaaggttcactgcgttttccacaaggtaagtaaaaagtaaacaaataaagacgatttgttgataaagcatgtactgtaaactagcgacgttaactaattacatcaagttattaaaaatatatttttctcacatataacaTTGGTCATGCATttgaacaatatatacattttaagataaggaacagtgtaaccagattgttgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgtttcaatattaaagaacatcaagtgtttccaaacgtttattgtaaaaacaataattttccatgcctttaaaggaaaaaaggcagaaattttgcccgtctgagcacattttattcattttacaacacaaaactaaacaaaaaacagcttaatctaccacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatactgttcagatatgaatattcttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaAAAAGTTAAATCACTTTACCcatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttgtatttgtttgattcaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcaCTACTATTGTAATCACAGAAAGAGACGCAttagttttactattactattgtttatgacaaacattaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactatttgttctgggtgttgatagtggccaatcatttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgtccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacattttttgttgtttttatctggtaCAGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGAGCCTTGCTCCAGTGACTGTCAGTGTGTACTTCCTTGTTTCCATTAGTCCCTGTATCTGTAGACCCAGGTGACAGTGGGCTAGAgtcaaattttgtttttatttaaactaaggcaTACTGATGGCCTTTTTATCTCAGATTTGGTCATGCACGAATTAatatatcctaaaatatttttatattctttccattggtggaaaagatgttggtataattattttaaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCCCTTCATCTGTCCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACAaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagctctttGATGTTCACCTAGTAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGGATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAAGAGTTGCAAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTATATCTGAGATAGATGAGCTATATGATTATCTTAAACTGATCTACAGGTAAATGCCAAAACTTATtggtttacttatttgtttgtttgtttttttgtatatgttaACCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATGTTTCTTCTCTAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCCGACCTATTGATATCAGAAGGTAACAATATCCAGTAGAATTTGTTTTAGTTGTTCTGTAACCTATTTAAATAGTATTGTGATTTTTGATTGCTTATCACTGTAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattactgtcattttttcagttgcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCATCATATGGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTTACGTATAATCCTTGTTATACAACTTtctttttatgaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTAATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtgattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaaaataactgagaaataaacaacaatatgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagtaaatagacattttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatct
>TCONS_00047252
atttctttaaaaatccaattttgttttctaataagcaAAAAGTTAAATCACTTTACCcatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttgtatttgtttgattcaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATGTTTCTTCTCTAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCCGACCTATTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattactgtcattttttcagttgcagaagcaaagacaacaa

Function

GO:

id name namespace
GO:0048882 lateral line development biological_process
GO:0071696 ectodermal placode development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047250 False 474 lncRNA 0.38 3 37046594 37049897
TCONS_00047251 False 3222 lncRNA 0.34 2 37046594 37049911
TCONS_00047252 True 684 lncRNA 0.39 3 37047289 37049325

Neighbor

gene id symbol gene type direction distance location
XLOC_023634 dnaaf3 coding downstream 43017 36995295 ~ 37003577 (-)
XLOC_023633 dnaaf3l coding downstream 136370 36903172 ~ 36910224 (-)
XLOC_023632 NA coding downstream 167467 36872875 ~ 36879127 (-)
XLOC_023631 fam171a2b coding downstream 220090 36812640 ~ 36826504 (-)
XLOC_023630 dcakd coding downstream 243703 36798558 ~ 36802891 (-)
XLOC_023636 NA coding upstream 19772 37069683 ~ 37076817 (-)
XLOC_023637 NA coding upstream 120406 37170317 ~ 37170924 (-)
XLOC_023638 cog7 coding upstream 145552 37195463 ~ 37225877 (-)
XLOC_023639 ube2ib coding upstream 207685 37257596 ~ 37272116 (-)
XLOC_023640 CABZ01055522.1 coding upstream 224848 37274759 ~ 37287792 (-)
XLOC_023665 dre-mir-735 misc upstream 1128050 38177961 ~ 38178027 (-)
XLOC_023628 NA non-coding downstream 347587 36689295 ~ 36699007 (-)
XLOC_023625 NA non-coding downstream 467127 36574093 ~ 36579467 (-)
XLOC_023621 NA non-coding downstream 618813 36275575 ~ 36427781 (-)
XLOC_023641 NA non-coding upstream 239557 37289468 ~ 37295101 (-)
XLOC_023644 CU469584.1 non-coding upstream 311278 37361189 ~ 37404466 (-)
XLOC_023651 NA non-coding upstream 655715 37705626 ~ 37708051 (-)
XLOC_023624 NA non-coding downstream 679828 36364436 ~ 36366766 (-)

Expression


Co-expression Network