G450390


Basic Information

Item Value
gene id G450390
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86590329 ~ 86590619 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU509770
ATTGTCTCCGGGACGGATCGAAGGCTTTGTCCATGAGTGAGCCGGGGTAAATCCGAAGCACTCCATTGGGCGTTGCTATGTAACGGCGCACAATGTAGCAGTTGAGGCTACTCATCTCCATGAGTGTCATCCATTCATCTGTGACGTGACTGGTCGCCATCACCTCGTTCCTGACCGACgactagagggagagagcgatatAGACAGAGGAGCTGAGCTCTCGCTTTAATGCAAGGTAGGCCCAGATCAGGATCTCTCACCACGCACAGagagtctctcagtctctccccc

Function

NR:

description
VWFA and cache domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU509770 True 291 lncRNA 0.54 1 86590329 86590619

Neighbor

gene id symbol gene type direction distance location
LOC118964680 NA coding upstream 221389 86364739 ~ 86368940 (+)
jak1 jak1 coding upstream 246945 86264428 ~ 86343384 (+)
LOC110524728 NA coding upstream 328177 86259980 ~ 86262152 (+)
LOC118964753 NA coding upstream 364384 86225891 ~ 86225945 (+)
LOC118964678 NA coding upstream 931421 85656730 ~ 85659355 (+)
si:dkey-148h10.5 LOC106560479 coding downstream 503415 87094034 ~ 87107836 (+)
dock7 LOC106560483 coding downstream 811151 87401770 ~ 87493654 (+)
kank4 kank4 coding downstream 931086 87520224 ~ 87666404 (+)
dmrt2b LOC106560523 coding downstream 1581140 88171759 ~ 88177340 (+)
fam183a LOC106560522 coding downstream 1670817 88261436 ~ 88263514 (+)
G450389 NA non-coding upstream 200 86589790 ~ 86590129 (+)
G450387 cachd1 non-coding upstream 5341 86584736 ~ 86584988 (+)
G450377 NA non-coding upstream 14731 86569219 ~ 86575598 (+)
G450373 NA non-coding upstream 25531 86564585 ~ 86564798 (+)
G450372 NA non-coding upstream 26279 86563834 ~ 86564050 (+)
G450391 NA non-coding downstream 1052 86591671 ~ 86592083 (+)
G450398 NA non-coding downstream 10433 86601052 ~ 86601506 (+)
G450399 cachd1 non-coding downstream 11109 86601728 ~ 86602040 (+)
G450415 NA non-coding downstream 42978 86633597 ~ 86634739 (+)
G450416 NA non-coding downstream 44296 86634915 ~ 86635701 (+)
G450331 NA other upstream 34282 86554473 ~ 86558452 (+)
G450333 NA other upstream 121392 86468538 ~ 86468937 (+)
G449809 NA other upstream 1142754 85445964 ~ 85447575 (+)
G449774 NA other upstream 1261387 85328572 ~ 85328942 (+)
LOC118964674 NA other upstream 2200728 84386803 ~ 84389601 (+)
G450394 NA other downstream 5528 86596147 ~ 86596515 (+)
G451408 LOC106584030 other downstream 253257 86843876 ~ 86844271 (+)
G451959 LOC106584028 other downstream 830185 87420804 ~ 87422836 (+)

Expression


Co-expression Network