G450445 (cachd1)


Basic Information

Item Value
gene id G450445
gene name cachd1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 86711943 ~ 86712373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU509828
CAGTTTTTTCATTTGAACGGCTAAAACTTGTGCCTCCTCCAAGATCGAGAACTCCGTTTCGGCACCACAAACCCCACAACATAGAAGCGACATGACTGCCATACAGCTCCAAGAAACCGCCATGAAGTCATACCAGTGGAGTCTCGACTGCTTACTCCAATTCGTGTATGGAATTTGTGTTAAAATCACGGATCCTTCTCCCCCTACCCGCCTCGCCATGGTGGCTGGGGTAGTTGAATAGTAAACAGGGAATTCGCTTTGCAGCCCTTGGGGGAAAACTTCAAGGGAACAACTTCGCAACGTCGTCGCTAAACCTGGACCTCCTTTCAAGACAAACTCCCTCGATTTTAAACGGCGACATCAATGCATATTCGGGAATCATTGAAGGCAGGAAAATAAAATCCGTGAAAGCACCTATAgctgtttttttt

Function

symbol description
cachd1 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACHD1 (cache domain containing 1).

NR:

description
VWFA and cache domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU509828 True 431 lncRNA 0.47 1 86711943 86712373

Neighbor

gene id symbol gene type direction distance location
LOC118964680 NA coding upstream 343003 86364739 ~ 86368940 (+)
jak1 jak1 coding upstream 368559 86264428 ~ 86343384 (+)
LOC110524728 NA coding upstream 449791 86259980 ~ 86262152 (+)
LOC118964753 NA coding upstream 485998 86225891 ~ 86225945 (+)
LOC118964678 NA coding upstream 1053035 85656730 ~ 85659355 (+)
si:dkey-148h10.5 LOC106560479 coding downstream 381661 87094034 ~ 87107836 (+)
dock7 LOC106560483 coding downstream 689397 87401770 ~ 87493654 (+)
kank4 kank4 coding downstream 809332 87520224 ~ 87666404 (+)
dmrt2b LOC106560523 coding downstream 1459386 88171759 ~ 88177340 (+)
fam183a LOC106560522 coding downstream 1549063 88261436 ~ 88263514 (+)
G450439 NA non-coding upstream 11083 86700636 ~ 86700860 (+)
G450431 NA non-coding upstream 29671 86681997 ~ 86682272 (+)
G450429 NA non-coding upstream 52751 86658982 ~ 86659192 (+)
G450428 NA non-coding upstream 54323 86657277 ~ 86657620 (+)
G450427 NA non-coding upstream 55131 86656595 ~ 86656812 (+)
G451354 NA non-coding downstream 37157 86749530 ~ 86750118 (+)
G451369 LOC106584030 non-coding downstream 54300 86766673 ~ 86766972 (+)
G451370 NA non-coding downstream 54653 86767026 ~ 86767355 (+)
G451371 NA non-coding downstream 56555 86768928 ~ 86769196 (+)
G451374 NA non-coding downstream 62893 86775266 ~ 86775613 (+)
G450394 NA other upstream 115428 86596147 ~ 86596515 (+)
G450331 NA other upstream 155896 86554473 ~ 86558452 (+)
G450333 NA other upstream 243006 86468538 ~ 86468937 (+)
G449809 NA other upstream 1264368 85445964 ~ 85447575 (+)
G449774 NA other upstream 1383001 85328572 ~ 85328942 (+)
G451408 LOC106584030 other downstream 131503 86843876 ~ 86844271 (+)
G451959 LOC106584028 other downstream 708431 87420804 ~ 87422836 (+)
G452064 NA other downstream 905759 87618132 ~ 87620643 (+)

Expression


Co-expression Network