G451524 (efcab7)


Basic Information

Item Value
gene id G451524
gene name efcab7
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87088554 ~ 87090352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU511021
TGTATAGATGTGGGCTCTGCCAGCTTGACGCTCTTAGTGTTGCTGGCTGCCATGGTGATGGCGTTAGACAGTGACGACCGTCTACTGCGAGCTGAGGAGGGCCGGGACGACGATCTGCTGTctgagagacCTTTCTTCAGTGTGATGTCCGGCTCGGTTTTGTGAGGTGGCTGGGGGACAGTCACAGCGGTGGACGCTAAGCTCTTTGGAGGGCTGTCTAACTCGTTGCCAAAGTTCTGCCTCTTCAGCTTGGCATCAGCCTCCAGTCTCTCCAGAGCTGCAATCTGACACTGCTCTGCCGTGGACTCCAACAGTCTGCAGAACT

Function

symbol description
efcab7 Predicted to enable calcium ion binding activity. Orthologous to human EFCAB7 (EF-hand calcium binding domain 7).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU511021 True 325 lncRNA 0.56 2 87088554 87090352

Neighbor

gene id symbol gene type direction distance location
LOC118964680 NA coding upstream 719614 86364739 ~ 86368940 (+)
jak1 jak1 coding upstream 745170 86264428 ~ 86343384 (+)
LOC110524728 NA coding upstream 826402 86259980 ~ 86262152 (+)
LOC118964753 NA coding upstream 862609 86225891 ~ 86225945 (+)
LOC118964678 NA coding upstream 1429646 85656730 ~ 85659355 (+)
si:dkey-148h10.5 LOC106560479 coding downstream 3682 87094034 ~ 87107836 (+)
dock7 LOC106560483 coding downstream 311418 87401770 ~ 87493654 (+)
kank4 kank4 coding downstream 431353 87520224 ~ 87666404 (+)
dmrt2b LOC106560523 coding downstream 1081407 88171759 ~ 88177340 (+)
fam183a LOC106560522 coding downstream 1171084 88261436 ~ 88263514 (+)
G451509 NA non-coding upstream 33086 87055002 ~ 87055468 (+)
G451502 NA non-coding upstream 45190 87042593 ~ 87043364 (+)
G451463 NA non-coding upstream 108020 86980245 ~ 86980534 (+)
G451459 NA non-coding upstream 112729 86975137 ~ 86975825 (+)
G451398 NA non-coding upstream 262365 86825972 ~ 86826189 (+)
G451853 NA non-coding downstream 147272 87237624 ~ 87237877 (+)
G451862 NA non-coding downstream 177592 87267944 ~ 87268218 (+)
G451869 NA non-coding downstream 185471 87275823 ~ 87276275 (+)
G451897 NA non-coding downstream 227658 87318010 ~ 87318237 (+)
G451408 LOC106584030 other upstream 244283 86843876 ~ 86844271 (+)
G450394 NA other upstream 492039 86596147 ~ 86596515 (+)
G450331 NA other upstream 532507 86554473 ~ 86558452 (+)
G450333 NA other upstream 619617 86468538 ~ 86468937 (+)
G449809 NA other upstream 1640979 85445964 ~ 85447575 (+)
G451959 LOC106584028 other downstream 330452 87420804 ~ 87422836 (+)
G452064 NA other downstream 527780 87618132 ~ 87620643 (+)
G452097 NA other downstream 617987 87708339 ~ 87708652 (+)

Expression


Co-expression Network