G452248


Basic Information

Item Value
gene id G452248
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 87493136 ~ 87493960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU511926
TTTTAAACGgattacaataatgagatgtatccactaatccaaagaaaggataggcgGGAGCTAGACAGACCATTCCActttgtggacaacgactcccattgggTGGAGAGACATgcatcttgtcagtatatccataataATGGCCCAGTTTTCCCTCTAACGCCGCCCCTCTGATCTTATTTTGAGTTTCAGGGGACATGCTTGAATTAAGTCAATTTGTTTATAGGTAACCATGGAAACCATACCCTGTGACTGGGAAACCCATATTCCGTTAACCTCCCATCAAAGAAAATACCAATGCATCCATTGGACATTAAAATATTGATTTAGTAAAATACTtaaagtaaacaaaaactacataaaacAATTCATGATGTTTAAAACATTTCCTTAACTTTAAACAAAAGTATCTTAACTAAAAATAAAGCATTATGATAAAGAGTGGTAGCACATAttttgcttgttttttttctcattttggaTTAAATAATAAACTTTCAAGTCATAAAATGTAATGAAAAAAAGGTGCACACATGAAATATGTATACAGATTTGACACATCGTACATAGTAAGTTCCACTTTGTTAAACCCACTGATTGCGTAACAGGCTGCCTGTAAACGAATAAGACACTGGAATGATGTACCGACTTCGTAGTAACACTTTAGCTTTCCTTCTATGGGGAACACTGACTTCTCAAGACACTGACCATCAGTATTTACACATTAATAAATTAAGGTTGTGATCCTTCAATTCTCTTCATCTTCAAAGTTCAAGCTTGCGAAGACTCATTCTGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU511926 True 799 lncRNA 0.35 2 87493136 87493960

Neighbor

gene id symbol gene type direction distance location
angptl3 LOC106584028 coding downstream 69068 87419230 ~ 87424068 (-)
atg4c atg4c coding downstream 91723 87391661 ~ 87401413 (-)
foxd3 foxd3 coding downstream 339317 87151825 ~ 87153819 (-)
alg6 alg6 coding downstream 348795 87108000 ~ 87144341 (-)
efcab7 efcab7 coding downstream 399242 87071831 ~ 87093894 (-)
usp1 usp1 coding upstream 11789 87505749 ~ 87520050 (-)
LOC110522895 NA coding upstream 163969 87657929 ~ 87659520 (-)
LOC110523029 LOC106584023 coding upstream 191253 87685213 ~ 88049103 (-)
LOC110524751 LOC106560521 coding upstream 768615 88262575 ~ 88268140 (-)
ap1m3 LOC106560519 coding upstream 811968 88305928 ~ 88348088 (-)
G452274 NA non-coding downstream 25541 87466904 ~ 87467595 (-)
G451940 NA non-coding downstream 104597 87388269 ~ 87388539 (-)
G451936 NA non-coding downstream 109653 87383254 ~ 87383483 (-)
G451935 NA non-coding downstream 110038 87382886 ~ 87383098 (-)
G451890 NA non-coding downstream 194009 87296856 ~ 87299127 (-)
G452330 NA non-coding upstream 90231 87584191 ~ 87666309 (-)
G452348 NA non-coding upstream 133293 87627253 ~ 87690633 (-)
G452370 NA non-coding upstream 198123 87692083 ~ 87692343 (-)
G452375 NA non-coding upstream 212317 87706277 ~ 87706486 (-)
G452376 NA non-coding upstream 212689 87706649 ~ 87706934 (-)
G451856 NA other downstream 249903 87241854 ~ 87243233 (-)
ror1 LOC106560470 other downstream 727149 86763372 ~ 87043134 (-)
G451286 NA other downstream 895392 86597352 ~ 86597744 (-)
G451271 NA other downstream 943258 86548838 ~ 86549878 (-)
G450957 NA other downstream 1614162 85877733 ~ 85878974 (-)
G452255 NA other upstream 4406 87498366 ~ 87499136 (-)
G452442 NA other upstream 366167 87860127 ~ 87866464 (-)
G452457 NA other upstream 400772 87894732 ~ 87895212 (-)
G452504 NA other upstream 490000 87983960 ~ 87984633 (-)

Expression


Co-expression Network