XLOC_023646 (h1-0)


Basic Information

Item Value
gene id XLOC_023646
gene name h1-0
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37567029 ~ 37568359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046682
GTTCTCCGTCAGGGTTATTATTGTTTGAATATTGTAATTCGCAAATAGACAAAGAACAAGCAGCGACGCGACGGTTATTTCATACGTTATTGCTTATTTTTAGTCGGAGCTGTCCAAGAAATCCCTCTCAAGGAACTCGCCAAGAGTTTTTGACAGCTCAGTCCCGGTTTTTTTCGTGAAATCTTCCAGGACTGACCATGGCTGAGACGGCAGCTACACCCTCGTCCAAGCCCAAGAGGGCGAAAAGCTCCAAGAAAGGGACGTCGCATCCCAAGTACTCAGAGATGATCAAAGCGGCCATCGCCGCCGACCGGAGCCGCGGTGGCGCGTCGCGTCAGTCCATCCAGAAGTATGTGAAACACCACTACAAGGTGGGCGACAACGCGGACTCGCAGATCAAACTCGCTCTGAAGCGGCTGGTGGCCGGCGGTGACCTGCGCCACACCAAGGGCATCGGCGCGTCGGGCTCCTTCAAACTGGCCAAAGCTGAGGACATCAAGAAGCCAGAGAAACCCAAACCCGCAGCCGCCAAAGCCAGGAAGCCAGTCAAAGCCGCTGCCAAACCCAAGAAAGCCCCCAAACCAAAGAAAGTGACAAAGTCTCCTGCAAAAACCAAGAAAGCAGCGGAGAAGAAAGTGAAGAAAGCAGCGGAGAAGAAGAAATCGCCCGTCAAAGCCAAGAAAGTTGTGAAGAAGGCGAAGGTGGCCAAACCTGCCAAGGCGAGCAAAGCCAAGAAGGTGAAAACGGCGAAGCCCAAACCCAAAACAGCGGCCAGGAAAACTGGCAAAAAGAAGTAAACTTGAACTCAATTCGGAACTCTTGTGTAAATACACTTTTTGAAGCAATTCTTTTGGTAATACTGTTATTTTTGTATGGTCTTTGTGCGCGGACTTTAACTGCACATTTCTACAGCCTGTTTCTTCAGAAACTTTTTTTGTGAGCGCGCATTGTGATTCTGTCAAGAAGATCTTCGACATCGAAATGGCTgaactgttatttatttttttttttgtttctgaacttttttgttttctttaaaacatgaACTGTGTTGCAcactttcatcatcatcatctttcaGACATGCTAATTAACTTTCCAATTAGACGTGTCTCTAGAAGATATATTCTTAATGTAGGTCTTTATAGGACTGTGAAGAACAATAATAAAACGTCCTTGTATGAAGAACGGTGCCCTATGACGACGATGTACAGAATCGCCTTGTGACGTGGACTGTTGTAGTCTAGCTCCATTGCTGTCCATAATATAATACTGTCATTGTGCGTAACACACACTACTGTGCATCAATAAACTCCTTTTTTGCAAACTCA

Function

symbol description
h1-0 Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in DNA packaging and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H1-0 (H1.0 linker histone).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030261 chromosome condensation biological_process
GO:0016584 nucleosome positioning biological_process
GO:0031936 negative regulation of chromatin silencing biological_process
GO:0045910 negative regulation of DNA recombination biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031492 nucleosomal DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-337 Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in DNA packaging and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H1-0 (H1.0 linker histone).

Ensembl:

ensembl_id ENSDARG00000038559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046682 True 1331 mRNA 0.46 1 37567029 37568359

Neighbor

gene id symbol gene type direction distance location
XLOC_023645 cluap1 coding downstream 82906 37466770 ~ 37484123 (-)
XLOC_023644 CU469584.1 coding downstream 162563 37361189 ~ 37404466 (-)
XLOC_023643 tsr3 coding downstream 228290 37329119 ~ 37338739 (-)
XLOC_023642 pdpk1b coding downstream 240793 37301852 ~ 37326236 (-)
XLOC_023641 NA coding downstream 271928 37289468 ~ 37295101 (-)
XLOC_023647 zgc:112496 coding upstream 63273 37631632 ~ 37640705 (-)
XLOC_023648 anks3 coding upstream 92781 37661140 ~ 37680917 (-)
XLOC_023649 zgc:112185 coding upstream 112723 37681082 ~ 37688398 (-)
XLOC_023650 si:ch211-231f6.6 coding upstream 127409 37695768 ~ 37698796 (-)
XLOC_023651 NA coding upstream 137267 37705626 ~ 37708051 (-)
XLOC_023665 dre-mir-735 misc upstream 609602 38177961 ~ 38178027 (-)
XLOC_023637 NA non-coding downstream 396105 37170317 ~ 37170924 (-)
XLOC_023636 NA non-coding downstream 490212 37069683 ~ 37076817 (-)
XLOC_023635 NA non-coding downstream 517118 37046594 ~ 37049911 (-)
XLOC_023652 NA non-coding upstream 156615 37724974 ~ 37726949 (-)
XLOC_023658 BX001030.2 non-coding upstream 516958 38085317 ~ 38092588 (-)
XLOC_023660 BX001030.1 non-coding upstream 530537 38098896 ~ 38099675 (-)
XLOC_023667 NA non-coding upstream 629479 38197838 ~ 38215482 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00342487_00345301 NA coding CI01000329 null 342436 ~ 345539 (-)