XLOC_023650 (si:ch211-231f6.6)


Basic Information

Item Value
gene id XLOC_023650
gene name si:ch211-231f6.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37695768 ~ 37698796 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046686
TGCACAATCTGCGTCTCTGATAGGCTGATACTCAGACTTCTGGGATATGTAGTCCCTGAAATTACCAAGCGTAGAGTTAGAATGCGCTTCAAACGATGAGTTTTAAATAGTTAATATAATGTTTTGCGTATTTAATACGCTAGTATTTAATTTATGTGAAGTGGTCAGACGAGTTATTTTCTTTAAAGCGTCTAAATTTCAAAGCGGAACTACATTTCAGTGAGTTGTAGCTTTCCTTCCGGGCGGAGTTTACAGCGGCGCACATTACATGACCTGAAGTGAGTCGCGTTATGAAGAAACCCTCAAGATGTCAAAAGTTTACACGCGTTTATCACGATTTTCCTTTGCTTATAATGCTTTTACCAGCCGAAGACACGCGAAATTAAGGCCGTGTGCCACAAGGATGCTGTCCATAACATCAGCGCTGCACGCAAAGTCCAGGAAACCTCCAGAACATGAGGATGAAGTAGTAGACAAACCCATCAAGTTCTCCACCAGCCCCGCCAGTCACAGGACCTGGAACGTGGACCGATCCATGGGCAGCAACTTCCAGCGGCCCTGGTGGAAAGTCCTCCCCATCAGCCTGTTAGGAGTGGGTATCCTCCTGTGGTGTGTGTTCAGGAAAGAGACCGAGGTAGACCAGACTCTGGAGAAAAACCTCTATGATCATATATCAGGACTGCTGtctgaggaggaagaagaggaagtcaaaaacaaaccatcatcatgACTCAAACTAAAATGGAGACTTTATTTTTCATCTGCGATGTTAATTTATGGTTTAATGCTAACTTCGGAAGTAAAACGTTTTCTACGTCAAATCAGCCGTCCAAAATGTCTGGtcttgaatgtgtttgtgttgaaGCGGATCGTCTGAATATGCCATTTCAGAATTGAATTTGACTGCTAGTTGTTATTAACATCAGAGGATGCATtactgcagtgtttctcaaccatgtttctgaaggaccaccagcactgcatgttttggatgtctcctttatctgtcagacccattacaggtctttgctaatgatgatctgaatcagatgtgtttgattaagaAAACAAGGAAAATGTGTATAGATggcggtcctccaggaacatggttgagaaacactgcattagtGGACACACTGAAAAAGCGCCTTCATTATCTGCTACTTGATCTGTATAATAAACTCATATTAGGAA

Function

symbol description
si:ch211-231f6.6 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C16orf91 (chromosome 16 open reading frame 91).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-156 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human C16orf91 (chromosome 16 open reading frame 91).

Ensembl:

ensembl_id ENSDARG00000100025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046686 True 1194 mRNA 0.42 2 37695768 37698796

Neighbor

gene id symbol gene type direction distance location
XLOC_023649 zgc:112185 coding downstream 7370 37681082 ~ 37688398 (-)
XLOC_023648 anks3 coding downstream 14851 37661140 ~ 37680917 (-)
XLOC_023647 zgc:112496 coding downstream 55063 37631632 ~ 37640705 (-)
XLOC_023646 h1-0 coding downstream 127409 37567029 ~ 37568359 (-)
XLOC_023645 cluap1 coding downstream 211645 37466770 ~ 37484123 (-)
XLOC_023651 NA coding upstream 6830 37705626 ~ 37708051 (-)
XLOC_023652 NA coding upstream 26178 37724974 ~ 37726949 (-)
XLOC_023653 tmem204 coding upstream 155206 37854002 ~ 37877978 (-)
XLOC_023654 metrn coding upstream 242822 37941618 ~ 37955993 (-)
XLOC_023655 si:ch211-248l17.3 coding upstream 300294 37999090 ~ 38012593 (-)
XLOC_023665 dre-mir-735 misc upstream 479165 38177961 ~ 38178027 (-)
XLOC_023644 CU469584.1 non-coding downstream 291302 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 400667 37289468 ~ 37295101 (-)
XLOC_023637 NA non-coding downstream 524844 37170317 ~ 37170924 (-)
XLOC_023636 NA non-coding downstream 618951 37069683 ~ 37076817 (-)
XLOC_023635 NA non-coding downstream 645857 37046594 ~ 37049911 (-)
XLOC_023658 BX001030.2 non-coding upstream 386521 38085317 ~ 38092588 (-)
XLOC_023660 BX001030.1 non-coding upstream 400100 38098896 ~ 38099675 (-)
XLOC_023667 NA non-coding upstream 499042 38197838 ~ 38215482 (-)

Expression


Co-expression Network