XLOC_023655 (si:ch211-248l17.3)


Basic Information

Item Value
gene id XLOC_023655
gene name si:ch211-248l17.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37999090 ~ 38012593 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046691
GCACCTTTGTTTTAGATCCTTCATAAAGAATCGAGCTGAAGAAACTTCATGTGCGGATCGAACTCATTCAGCTGAACTAGAGCTGAAATCTGATGGCTGCATTTCTACGTGATCCCACTCCTGATCAGACACAAGTGTACAATTCACAATCTCATCCTCACACACCTATTGCAAACCTGCCCTAAAAagcactcataaacacacacacacacactcacaaagagAAATCCATCTTTAAGAGAATCCTGGATTCCCCTGAATCAGACTGCACCATGTCCAAGGATAACTGCAAGCAAGTGGGCTGCAAACACAAAGAGCGCAAACCCAAAAAGCCGCACTACATCCCGCGCCCATGGGGCAAACCCTACAACTACAAATGCTTCCAATGCCCCTTCACCTGCATGGAGAAATCACACCTGTACAACCACATGAAGTACAGCCTGTGCAAAAACTCCCTGTCGCTGCTAATCGAGTCCGACTGGCCCTATAAAAAAGACCAGCTCCGGCTCCAGCAGGTAGCCGTCCGCTCTCGAAGCCCAGCGAAAGCTCACTCTGAGCAGGCAACAACCCCAGATGAGCCCTCGCACTCATCAGCCAATCTGGAGGAGGAAGAAACTGAAAAAAGAGATGAAAAAGATGAAGACATCCAAGAAGCAAATGCAGAAAACCCATCGGAAACGTGTTCAAGAAGAGCGAAGCCATCAAAACAAGAAGCCGAATTGGTGATGGCGGACATGTTTTCTTTGGAAGAGCAACTTTTGCGAGCCCGCTCAGTGGAGGTGGAATCAAAACTGAGACACTACAGGCTGTCAAAAACATGTCTGTCAGGCCCAGCCGCGCTGCTTTCAGAACAATGGCGCATACTTAGCAATCAAACATCCAATGTGAAGCCAAAACCAGACGTGGCGGCTCCGTCGCTACCCTGCTATCCTCCGGTCTCAACGAGTCAAATCGAATGCTCAGATCCACCAGCGTTCAATCTGTCTTTACTTGGTGTGGGTTATCCTTTGGCTCCAGGACTTCTGTCATATTTAAATCCAACACTAAGCAATGCAAACCCGTCAAACGCACCTCTACCATTCCTAGCATCACAGCTAGCGCACTCACAGAGACACTCGGAGCGTTCTCTACTCCCTCCGCATCTGTATTATCCGTTCTTGTGCGAACACACATTTGGAGCGACTCCTTCTTCATCAGCATCTGAAGCCAGTAAACTCATTAAAGCTCCATCTGTGGGTCTTCAGCCGCCTTCATATCCTCCAAAACTGAGCCTGTGGAAGGTGCCGGCGCTGCGGCCCTCGTCCAGCCAGAGCTCCCCGGCTGCGGTCTGGACGTCCCCCACACACTCGTCCCCAGAGCCGGGCCTCGGGGCACTGCAGGAGCGGGTGAGGGACAGGAAAAGCAGCTGGCAGCAGGAAACGTCGAGTCTGAAGAGGACAGCGATGGCGGGGTTCGACACCCATGGTGCACCGGTGGAAAAGAAACCAGCGCTGGAGATCGGCCTCGAGACTTTGAAAAACACTCAGAAACCTGCATCCATCGCTGCCTTGATGTCCAGCAGGATGCCCATACACAACAGCGCCGGCTCGTCCCCGCTGCATCTGTCTGAGCAGCTGGAGGCCAGACAGAGAGGAATGGAGAGAGAATCGGCGCTCCTGCAGGACTTCAGCGCATTATTACAGGAGTACCAGCTCACCGAGCAGCGCGCCGCGTCCCTACCGGAGCAGTGCCATCTGTGGGCACACCTGGGCAAGATCCGCACGGAGCTCTCGCATATTCAACAGGCACTAGAGCGGACAGCTCGGTCCAACGAAGGACCTCTGGATCTGTCAGTCAAAAAGGATCATCCACTAATCATCAATGCAATTCCTGGAGAAACTAAAGACGAAGACTGCTCTGAAactgaagatgaagatgatgacgatgatgatgatgaagatgacggTAAAGACAGACGCAAGTGTTCTCTGGATGCGCTGATGAAGCTGAATCCTCTGGTGAAGACGGAGGTGTTGACAGGCAGCGCTGAAGCTCTGTGGCACAGCAGGACCACAAAGTGTGAAGCGGATTCAAGTGTCCTTCTGTGCTCCAAAACGCCCAACAGACCCCCGTCCATCCAGCATCTGGACACACTCTGTCCCAGCAGCCCGCTCACAACCACTGACACACTGGTGTAGaggagatcacacacacacacaccctggaCGAAACTAACAGGCAAATGATCAGATGTACAGCTGAAGTctacatttcccaaatgatgttgaacagattcaggaatttttcacagtat

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120709-105 Orthologous to human PRR35 (proline rich 35).

Ensembl:

ensembl_id ENSDARG00000087663

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046691 True 2293 mRNA 0.52 3 37999090 38012593

Neighbor

gene id symbol gene type direction distance location
XLOC_023654 metrn coding downstream 43097 37941618 ~ 37955993 (-)
XLOC_023653 tmem204 coding downstream 121112 37854002 ~ 37877978 (-)
XLOC_023652 NA coding downstream 272141 37724974 ~ 37726949 (-)
XLOC_023651 NA coding downstream 291039 37705626 ~ 37708051 (-)
XLOC_023650 si:ch211-231f6.6 coding downstream 300294 37695768 ~ 37698796 (-)
XLOC_023656 crp1 coding upstream 60630 38073223 ~ 38079261 (-)
XLOC_023657 crp2 coding upstream 69878 38082471 ~ 38085789 (-)
XLOC_023658 BX001030.2 coding upstream 72724 38085317 ~ 38092588 (-)
XLOC_023659 crp3 coding upstream 80015 38092608 ~ 38097305 (-)
XLOC_023660 BX001030.1 coding upstream 86303 38098896 ~ 38099675 (-)
XLOC_023665 dre-mir-735 misc upstream 165368 38177961 ~ 38178027 (-)
XLOC_023644 CU469584.1 non-coding downstream 594624 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 703989 37289468 ~ 37295101 (-)
XLOC_023637 NA non-coding downstream 828166 37170317 ~ 37170924 (-)
XLOC_023667 NA non-coding upstream 185245 38197838 ~ 38215482 (-)
XLOC_023669 NA non-coding upstream 198510 38211103 ~ 38212927 (-)
XLOC_023670 NA non-coding upstream 228581 38241174 ~ 38252296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00555504_00558635 NA coding CI01000329 null 554827 ~ 558635 (-)