XLOC_023656 (crp1)


Basic Information

Item Value
gene id XLOC_023656
gene name crp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38073223 ~ 38079261 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046692
ATGCTGGCACCGGtggttttatttttctgtctgCTCTACTTGACACCCGCAACGACTGAAGTGGGTCTTGCTGGTAAAGTTCTTCTGTTCCCGTACGAGACAGACTTCAGCTACGTCAAACTCACTCCTAAGAAGCCTCTGGGTCTTTCAGCGTTTACTCTCTGCATGCGTGTGGCCACAGAGCTCCAGGGCGAGCGGCAGATCATCCTGTTCGCCTACCGAACACCCGACTTTGATGAACTGAATTTGTGGAGGGAGAAAGACGGCCGTGTGTCTTTCTACCTCAGCGGTGATGGGGCGTTTTTCAACCTGCCGCCTCTGTCCACCTTCCGGACGCACCTGTGCCTGTCCTGGAGCTCTCGCACCGGGCTCGCTGCCTTCTGGGTGGACGGACGCCGCAGTGCGTTTCAGCTTTATAAACCGGGCCACAGCATCCGCCCGCAGGGCACTGCTCTGCTTGGACAGGACCCTGATAAACTCCTGGGCGACTTCGAGACGGTGCAGAGTTTCGCCGGTGAACTCACAGACCTGAACATGTGGGATTATGTGCTCACCGGGAACCAGATTAAAGCGCTGTATTTCAACCATGCGCAGCGCGTGCCCAAGGCAAACGTGTTTGAGTGGAGCTCCATCGAGTATGAGATTAAGGGGAATGTGCTTGTCACGCAAGACGATTGA

Function

symbol description
crp1 Predicted to enable metal ion binding activity. Predicted to be located in extracellular region. Is expressed in ovary and testis. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein) and APCS (amyloid P component, serum).

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-060503-314 Predicted to enable metal ion binding activity. Predicted to be located in extracellular region. Is expressed in ovary and testis. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to human CRP (C-reactive protein) and APCS (amyloid P component, serum).

Ensembl:

ensembl_id ENSDARG00000071454

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046692 True 678 mRNA 0.55 2 38073223 38079261

Neighbor

gene id symbol gene type direction distance location
XLOC_023655 si:ch211-248l17.3 coding downstream 60630 37999090 ~ 38012593 (-)
XLOC_023654 metrn coding downstream 117230 37941618 ~ 37955993 (-)
XLOC_023653 tmem204 coding downstream 195245 37854002 ~ 37877978 (-)
XLOC_023652 NA coding downstream 346274 37724974 ~ 37726949 (-)
XLOC_023651 NA coding downstream 365172 37705626 ~ 37708051 (-)
XLOC_023657 crp2 coding upstream 3210 38082471 ~ 38085789 (-)
XLOC_023658 BX001030.2 coding upstream 6056 38085317 ~ 38092588 (-)
XLOC_023659 crp3 coding upstream 13347 38092608 ~ 38097305 (-)
XLOC_023660 BX001030.1 coding upstream 19635 38098896 ~ 38099675 (-)
XLOC_023661 crp2 coding upstream 30538 38109799 ~ 38113208 (-)
XLOC_023665 dre-mir-735 misc upstream 98700 38177961 ~ 38178027 (-)
XLOC_023644 CU469584.1 non-coding downstream 668757 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 778122 37289468 ~ 37295101 (-)
XLOC_023637 NA non-coding downstream 902299 37170317 ~ 37170924 (-)
XLOC_023667 NA non-coding upstream 118577 38197838 ~ 38215482 (-)
XLOC_023669 NA non-coding upstream 131842 38211103 ~ 38212927 (-)
XLOC_023670 NA non-coding upstream 161913 38241174 ~ 38252296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G175400 NA non-coding NC_053128.1 CM020925.1 17272932 ~ 17273373 (+)
tiger barb (Puntius tetrazona) G160392 crp1,LOC107555444,LOC107677239,LOC107556650,LOC108415657 misc NC_056722.1 CM032091.1 3530024 ~ 3589473 (-)