G453249


Basic Information

Item Value
gene id G453249
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89046260 ~ 89058507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU513112
gccagtgagtgtactgtaggtttatacacttacaaccagggagtgtactgtaggtttatacacttacaaccagggagtgtactgtaggtttatacacttacagccagggagtgtaggtttatacacttacagccagggagtgtactgtaggtttatacacttacagccagggagtgtaggtttacacacttacagccagggagtgtaggtttatgcacttacagccagggagtgtaggtttattcacttacagccagggagtgtaggtttatacacttacagccagggagtgtactgtaggtttatacacttacagccagggagtgtaggtttatacacttacaaccaggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU513112 True 351 lncRNA 0.44 2 89046260 89058507

Neighbor

gene id symbol gene type direction distance location
LOC110524761 LOC106584012 coding upstream 66371 88655985 ~ 88979889 (+)
LOC110522898 NA coding upstream 475075 88570295 ~ 88571185 (+)
LOC110522896 NA coding upstream 613607 88425966 ~ 88432653 (+)
prpf38a pr38a coding upstream 628412 88412848 ~ 88417848 (+)
LOC110524756 LOC106560515 coding upstream 645921 88390467 ~ 88400339 (+)
LOC118964683 NA coding downstream 589802 89648309 ~ 89669213 (+)
kifap3a kifap3 coding downstream 661931 89720438 ~ 89763740 (+)
swt1 swt1 coding downstream 754519 89813026 ~ 89847246 (+)
hmcn1 LOC106560561 coding downstream 911552 89970059 ~ 90193583 (+)
ptgs2b ptgs2b coding downstream 1207063 90265570 ~ 90272209 (+)
G453248 NA non-coding upstream 11489 89031794 ~ 89034771 (+)
G453247 NA non-coding upstream 13985 89026780 ~ 89032275 (+)
G453246 NA non-coding upstream 34325 89010832 ~ 89011935 (+)
G453245 NA non-coding upstream 35544 89010478 ~ 89010716 (+)
G453240 NA non-coding upstream 48897 88997122 ~ 88997363 (+)
G453294 NA non-coding downstream 93241 89151748 ~ 89155291 (+)
G453345 NA non-coding downstream 168064 89226571 ~ 89227523 (+)
G453348 NA non-coding downstream 170534 89229041 ~ 89233853 (+)
G453347 NA non-coding downstream 177250 89235757 ~ 89238160 (+)
G453377 NA non-coding downstream 214708 89273215 ~ 89273643 (+)
G452697 NA other upstream 741811 88303307 ~ 88304449 (+)
G452673 NA other upstream 822633 88223282 ~ 88223627 (+)
G452609 NA other upstream 920393 88120399 ~ 88125867 (+)
G452159 NA other upstream 1142820 87902315 ~ 87903440 (+)
G452111 NA other upstream 1274166 87770604 ~ 87772094 (+)
G453429 NA other downstream 326718 89385225 ~ 89386470 (+)
G453547 NA other downstream 541457 89599964 ~ 89600696 (+)
G454751 NA other downstream 1388188 90446695 ~ 90447956 (+)
G455168 NA other downstream 1730011 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 1935358 90993865 ~ 90994299 (+)

Expression


Co-expression Network