G453347


Basic Information

Item Value
gene id G453347
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89235757 ~ 89238160 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU513218
atagtaggatggagagacggagagagggtatagtcggatggagagacagagagagggtatagtaggatggagagatggagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacagagagagggtatagtaggatggagagacggagaggtacagtttaagaagagaaggagaagtgaAAGAGtgtgaagggaggacagagaaatGGGAGGGACTAGAGAAACACTCACTCCACCACTCTTCATTTTACGTAGTGTATTTAACAACATCCTGTttagagagagaaaagcaggacTAAATCAAGTCAACAACAACTAGCCCCAGTAAGGCCTTGGTACATTGACAGGGTAATGGCTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTCATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACCGGGTAATGCTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTGCATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGATGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGACGGGTACATTGACAGGGTAATGGTTAGATGGCAGATTtgtggaggcaggcaggcaggagcgTGAAATTAACGTTGTTCTGCAATCATCCAGATAGGAGCTGCTTCTCCTCTCACCATGTGTAAGGGTGTTTCTACATgtagtcctctttaaagtgaactggggtaaaagaaaagagaaaagaagCAAAAGAGCTCTGTTGTCGTTGTCTTCACACTGCTCTTGCCTTGGAATAAGGACTCGACTCTTTTTCCAGTTTAATTCACCTATTTTGTGGTCTGAGTTCTTCACATTCACAATGCTGTGTTTAGAAAGGAACCCAGATCTTTTTCCAGTTTAATTCACCTATTTTGTGGTCTGAGTCTGAAAACACCATAATATCATGACATATTGGTTCACTTCTCTCAGTCCGAACCAGTTATATTAAGGTTTTCTGAGGGTTTAAAAGTGTGAAAACACCATAATATCATGACATATTGGTTCACTTCTCTCAGTCCGAACCAGTTATATTAAGGTTTTCTGAGGGTTTAAAAGCTCATGTCTCAGCTCAAACCAATAACTTCACTAACATGCACACACCCGAGCCAGCTCCCAGAGGTTAGAAGTATGTT

Function

NR:

description
PREDICTED: putative proline-rich protein 21, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU513218 True 1581 lncRNA 0.44 9 89235757 89238160

Neighbor

gene id symbol gene type direction distance location
LOC110524761 LOC106584012 coding upstream 255868 88655985 ~ 88979889 (+)
LOC110522898 NA coding upstream 664572 88570295 ~ 88571185 (+)
LOC110522896 NA coding upstream 803104 88425966 ~ 88432653 (+)
prpf38a pr38a coding upstream 817909 88412848 ~ 88417848 (+)
LOC110524756 LOC106560515 coding upstream 835418 88390467 ~ 88400339 (+)
LOC118964683 NA coding downstream 410149 89648309 ~ 89669213 (+)
kifap3a kifap3 coding downstream 482278 89720438 ~ 89763740 (+)
swt1 swt1 coding downstream 574866 89813026 ~ 89847246 (+)
hmcn1 LOC106560561 coding downstream 731899 89970059 ~ 90193583 (+)
ptgs2b ptgs2b coding downstream 1027410 90265570 ~ 90272209 (+)
G453348 NA non-coding upstream 1904 89229041 ~ 89233853 (+)
G453345 NA non-coding upstream 8234 89226571 ~ 89227523 (+)
G453294 NA non-coding upstream 80466 89151748 ~ 89155291 (+)
G453249 NA non-coding upstream 177250 89046260 ~ 89058507 (+)
G453250 NA non-coding upstream 178015 89053856 ~ 89057742 (+)
G453377 NA non-coding downstream 35055 89273215 ~ 89273643 (+)
G453396 NA non-coding downstream 77515 89315675 ~ 89319363 (+)
G453413 NA non-coding downstream 100936 89339096 ~ 89340551 (+)
G453417 NA non-coding downstream 107765 89345925 ~ 89351633 (+)
G453428 NA non-coding downstream 134808 89372968 ~ 89374271 (+)
G452697 NA other upstream 931308 88303307 ~ 88304449 (+)
G452673 NA other upstream 1012130 88223282 ~ 88223627 (+)
G452609 NA other upstream 1109890 88120399 ~ 88125867 (+)
G452159 NA other upstream 1332317 87902315 ~ 87903440 (+)
G452111 NA other upstream 1463663 87770604 ~ 87772094 (+)
G453429 NA other downstream 147065 89385225 ~ 89386470 (+)
G453547 NA other downstream 361804 89599964 ~ 89600696 (+)
G454751 NA other downstream 1208535 90446695 ~ 90447956 (+)
G455168 NA other downstream 1550358 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 1755705 90993865 ~ 90994299 (+)

Expression


Co-expression Network