G453462


Basic Information

Item Value
gene id G453462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89441603 ~ 89442586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU513347
gctacagtacagtaccagtaactCCTTAACAGCCCTGCTGCTACATTACAGTACCAGTAACTCCTTAACAGTcctgctgctacagtacagtaccagtaactccttaacagtcctgctgctacagtacagtaccagtaactccttaacagtcctgctgctacagtaccagtaactccttaacagtcctgctgctacagtacagtaccagtaactccttaacagtcctgctgctacagtacagtaccagtaactccttaacaatcctgctgctacagtacagtaccaggaACTCCTTAACAGTcctgctgctacagtacagtaccagtaactccttaacaatcctgctgctacagtacagtaccagtaactCCTTAACAGCCCtcctgctacagtacagtaccagtaactccttaacaatcctgctgctacagtacagtaccagtaactCCTTAACAGCCCtcctgctacagtacagtaccagtaactccttaacagtcctgctgctacagtacagtaccagtaactccttaacaatcctgctgctacagtacagtaccagtaactCATTAACAGTCCTACTTctaagactgctaaacagttagttaaatagtttactaaaagctacccggactatctgcattgaccctttttgcactaactcttgactcatcacatacactgctgctactgtcctGTTGCCTAAAATGTGGCACCGGACATTTGACCGGCTGCATTTGAATATACTGGACATTGGAGAAATGTACCATGCATTGGGTGCAtcacct

Function

NR:

description
PREDICTED: probable basic-leucine zipper transcription factor F

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU513347 True 785 lncRNA 0.45 2 89441603 89442586

Neighbor

gene id symbol gene type direction distance location
LOC110524761 LOC106584012 coding upstream 461714 88655985 ~ 88979889 (+)
LOC110522898 NA coding upstream 870418 88570295 ~ 88571185 (+)
LOC110522896 NA coding upstream 1008950 88425966 ~ 88432653 (+)
prpf38a pr38a coding upstream 1023755 88412848 ~ 88417848 (+)
LOC110524756 LOC106560515 coding upstream 1041264 88390467 ~ 88400339 (+)
LOC118964683 NA coding downstream 205723 89648309 ~ 89669213 (+)
kifap3a kifap3 coding downstream 277852 89720438 ~ 89763740 (+)
swt1 swt1 coding downstream 370440 89813026 ~ 89847246 (+)
hmcn1 LOC106560561 coding downstream 527473 89970059 ~ 90193583 (+)
ptgs2b ptgs2b coding downstream 822984 90265570 ~ 90272209 (+)
G453436 NA non-coding upstream 42226 89396557 ~ 89399377 (+)
G453428 NA non-coding upstream 67332 89372968 ~ 89374271 (+)
G453417 NA non-coding upstream 89970 89345925 ~ 89351633 (+)
G453413 NA non-coding upstream 101052 89339096 ~ 89340551 (+)
G453396 NA non-coding upstream 122240 89315675 ~ 89319363 (+)
G453493 NA non-coding downstream 44400 89486986 ~ 89488001 (+)
G453494 NA non-coding downstream 45740 89488326 ~ 89489856 (+)
G453495 NA non-coding downstream 47557 89490143 ~ 89492322 (+)
G453511 NA non-coding downstream 67471 89510057 ~ 89510347 (+)
G453538 NA non-coding downstream 135284 89577870 ~ 89578144 (+)
G453429 NA other upstream 55133 89385225 ~ 89386470 (+)
G452697 NA other upstream 1137154 88303307 ~ 88304449 (+)
G452673 NA other upstream 1217976 88223282 ~ 88223627 (+)
G452609 NA other upstream 1315736 88120399 ~ 88125867 (+)
G452159 NA other upstream 1538163 87902315 ~ 87903440 (+)
G453547 NA other downstream 157378 89599964 ~ 89600696 (+)
G454751 NA other downstream 1004109 90446695 ~ 90447956 (+)
G455168 NA other downstream 1345932 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 1551279 90993865 ~ 90994299 (+)
G455211 NA other downstream 1618504 91061090 ~ 91062621 (+)

Expression


Co-expression Network