G453552


Basic Information

Item Value
gene id G453552
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 89606633 ~ 89606921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU513450
ggttgaaatccggggatatggagagaaaaataggtccggtatattctggtctgagtcgcgttgtacaaaactggcgatagctttttgagctaaaggatagctgatgaccatcaACCGTGGTTAGCTaaatactaacgttagccagtaaactggctagcttctggctagctcctggTTAGCTCCTGGTTAGCTCCTGATTAGCTtttggctagcttctggctagcttctggttagcttctggtagcttctggttagcttctggttagcttctggttagcttctattgtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU513450 True 289 lncRNA 0.46 1 89606633 89606921

Neighbor

gene id symbol gene type direction distance location
LOC110524761 LOC106584012 coding upstream 626744 88655985 ~ 88979889 (+)
LOC110522898 NA coding upstream 1035448 88570295 ~ 88571185 (+)
LOC110522896 NA coding upstream 1173980 88425966 ~ 88432653 (+)
prpf38a pr38a coding upstream 1188785 88412848 ~ 88417848 (+)
LOC110524756 LOC106560515 coding upstream 1206294 88390467 ~ 88400339 (+)
LOC118964683 NA coding downstream 41388 89648309 ~ 89669213 (+)
kifap3a kifap3 coding downstream 113517 89720438 ~ 89763740 (+)
swt1 swt1 coding downstream 206105 89813026 ~ 89847246 (+)
hmcn1 LOC106560561 coding downstream 363138 89970059 ~ 90193583 (+)
ptgs2b ptgs2b coding downstream 658649 90265570 ~ 90272209 (+)
G453545 NA non-coding upstream 8395 89598008 ~ 89598238 (+)
G453538 NA non-coding upstream 28489 89577870 ~ 89578144 (+)
G453511 NA non-coding upstream 96286 89510057 ~ 89510347 (+)
G453495 NA non-coding upstream 114311 89490143 ~ 89492322 (+)
G453494 NA non-coding upstream 116777 89488326 ~ 89489856 (+)
G453555 NA non-coding downstream 1561 89608482 ~ 89608871 (+)
G453984 NA non-coding downstream 2362 89609283 ~ 89609511 (+)
G453992 NA non-coding downstream 7619 89614540 ~ 89614765 (+)
G453994 NA non-coding downstream 11110 89618031 ~ 89621650 (+)
G454031 NA non-coding downstream 50767 89657688 ~ 89657984 (+)
G453547 NA other upstream 5937 89599964 ~ 89600696 (+)
G453429 NA other upstream 220163 89385225 ~ 89386470 (+)
G452697 NA other upstream 1302184 88303307 ~ 88304449 (+)
G452673 NA other upstream 1383006 88223282 ~ 88223627 (+)
G452609 NA other upstream 1480766 88120399 ~ 88125867 (+)
G454751 NA other downstream 839774 90446695 ~ 90447956 (+)
G455168 NA other downstream 1181597 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 1386944 90993865 ~ 90994299 (+)
G455211 NA other downstream 1454169 91061090 ~ 91062621 (+)
G455469 NA other downstream 1880824 91487745 ~ 91489990 (+)

Expression


Co-expression Network