XLOC_023667


Basic Information

Item Value
gene id XLOC_023667
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38197838 ~ 38215482 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047259
CAAGGCCATCGTGTGTGTTCAGTGTTTGAGCTGCTCCAGGATCAGTTCAGTCTCTGTGactctgactgactgacggaGGTTTTTGTACCACTCTTTATCACTGTGTGAACACAACATCACCCACACACTTATTGTTCGAATCTGTTCTGCAGTGGAAACTCTGACAGTAATAATGTCCAGCATCTTCAGTCTGGACTCCACTGATGCTCAGAGTGAAATCACTGTTTGATCCACTGCCACTGAATCTAGATGCAATTCCTGACTCAAGATGATTGACCCAATAAATCAGGAGTTTAGGAGCTTCTCCAGGTTTCTGGAAATACCAGGCTAAAGTTTGGTCTCCATCATAATATCTGTACACATCTGTGCTGGTTCTGCAGGTGATTGTGACGGTTTGGTCTGGTTCTGCTGTCATTGAGGGACTCTGAGTGACGCTGATCTGTCCTCCACACTCTGAAACACAACAAGAAGAAAATCAGCTCTAAATATATCGACAATCCActtgaagaatgaatgaatatgaaagcAGCGCTGGACAAACCTCGAGCAAACACTGTGAGAGTCCAGATGAAGATCATGATGAAGGTCATGATGATGAAAATTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047259 True 604 lncRNA 0.44 2 38197838 38215482

Neighbor

gene id symbol gene type direction distance location
XLOC_023666 igic1s1 coding downstream 798 38194136 ~ 38197040 (-)
XLOC_023664 crp7 coding downstream 5835 38137473 ~ 38192003 (-)
XLOC_023663 crp6 coding downstream 66457 38130604 ~ 38131381 (-)
XLOC_023662 si:ch211-234p6.9 coding downstream 75717 38121403 ~ 38122121 (-)
XLOC_023661 crp2 coding downstream 84630 38109799 ~ 38113208 (-)
XLOC_023670 NA coding upstream 25692 38241174 ~ 38252296 (-)
XLOC_023671 zgc:91999 coding upstream 53606 38269088 ~ 38288883 (-)
XLOC_023672 lrrc4bb coding upstream 153869 38369351 ~ 38384432 (-)
XLOC_023673 CU681836.1 coding upstream 181090 38396572 ~ 38397488 (-)
XLOC_023674 CU681836.2 coding upstream 231398 38446880 ~ 38447958 (-)
XLOC_023665 dre-mir-735 misc downstream 19811 38177961 ~ 38178027 (-)
XLOC_023660 BX001030.1 non-coding downstream 98163 38098896 ~ 38099675 (-)
XLOC_023658 BX001030.2 non-coding downstream 105250 38085317 ~ 38092588 (-)
XLOC_023652 NA non-coding downstream 470889 37724974 ~ 37726949 (-)
XLOC_023651 NA non-coding downstream 489787 37705626 ~ 37708051 (-)
XLOC_023644 CU469584.1 non-coding downstream 793372 37361189 ~ 37404466 (-)
XLOC_023675 FP102794.1 non-coding upstream 308511 38523993 ~ 38524619 (-)
XLOC_023676 NA non-coding upstream 320937 38536419 ~ 38548037 (-)

Expression


Co-expression Network