G454584 (LOC106560561)


Basic Information

Item Value
gene id G454584
gene name LOC106560561
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90192111 ~ 90193469 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU514649
CTTGGTAACTGACTAAGGATGAAGTGGTTAAAAGAATCCTATGAACCTTTAATGTTGTGATTGTATTGACTGTAATGAAGTAATGACCACTACTGTTCCTATCGGACACACAGGTAATGGAGTGTGTTGTGTACTCTGGGGATGAGGAAGAGGGGTGATTACCTGAGGTGGGCAAGAGTTTGACCATAGAGATGTGATACAATGGTGCAATGTCGATCTAAGTCTGACTGATAGACAGCCAAACTCCTCTCGCCAACAAGTCTCTACAGGCACCATTTCAGACCAATCAAATTACTTGCTCTGTTCTCCGGTCTGATGTCACAACATTTTGCGACCAACCAGCCAAAGAGTTACGCAAAGGAGGGAACTGACCCTTTTTTTTGGTATTCAAGCACTTCCCAATAAGTTAATAGGTAGATGTAAATAAAGGCTAGATAATGTTTCTTGTCTCTACCACTTTAagcctgaggagaggaggaggggaggaagactaCATTCTGGACCAACGGTGGACTCATCATGGGACCTGGAGAAGTAGTCTGGGTCATCTGTAAAGATCACAACACCTTGTGGACGAGAGAGGGCAGTGTAAAGTACAAGAGGGTCAAACAATTCATTCTAGTTCCACAAAGCCCCTTAACATTGGAGAGAACAGGATTCTATTTAAGATATCTGGCCAATAAATAGATGTTTACTTCCATCCGAGGGGAACTCGCTATTTTGTAAACTCTTTGGTGTGCACCAGGGACGAGTGTTGAGTCATCTCCTAATCTGCCTCCTGGGATTGCAGTGCTGTTCTCCTGTCCCACTTTAGTAGTTCTCATATACGAACAGTCTTTTTCTACTAGTTCCCATTTACTTATGTGGCAGCTTTAccaaccaaccacacacacacacacatacatacatccacgcACATGCTCGTTCGCAGTGGTGCTGCATACAGAGGTCGCAACCTTTTCTGTGCCCCCCCCATTTACACCGTCCTTTTAAAGTGCTCTCAGTAGGGATAGGCGGAGACGGCGATGTAGACGATGAAGGTGGTCTGGTACTCGATGCCTCCGTCAGCGCTGTAGGACAGGGAGCGAACCTTCATCCTGAAGGTGTGGGGCTCTCGGAGGGCCCTGGTTGTGAACAGCACCCCTTTCAGGTTCTCGTCTCGCAGGGCGAAGGGTAACGTCACGTCCTCGTCCACCACCAGGAAGGAGGTACGGGGGTGCACCACGCCGTCCTGCGTGTACGCCACCAGCCGGATCAGGTCCTGATTGGCCGCAATGCCAAAGGGGAGGGACAGCAGTTTGTACTCCAGTGCGTAAGGGCTTAGTGCACACTCCAGGTCGTTGGGAGGGCATTTCTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU514649 True 1359 lncRNA 0.49 1 90192111 90193469

Neighbor

gene id symbol gene type direction distance location
ivns1abpa ivns1abp coding downstream 273272 89853540 ~ 89918839 (-)
trmt1l trmt1l coding downstream 379798 89798954 ~ 89812313 (-)
niban1a fam129a coding downstream 400825 89763289 ~ 89791286 (-)
mettl11b mettl11b coding downstream 478284 89695543 ~ 89713827 (-)
gorab gorab coding downstream 542234 89644748 ~ 89649877 (-)
arpc5b LOC106560562 coding upstream 197 90193666 ~ 90203568 (-)
pla2g4ab LOC106560559 coding upstream 17613 90211082 ~ 90272430 (-)
LOC110524783 LOC106560556 coding upstream 136359 90329828 ~ 90332933 (-)
LOC118936343 LOC106560556 coding upstream 139243 90332712 ~ 90335328 (-)
b3galt2 LOC106560555 coding upstream 170772 90364241 ~ 90384094 (-)
G454596 LOC106560561 non-coding downstream 3257 90188366 ~ 90188854 (-)
G454595 NA non-coding downstream 3924 90187714 ~ 90188187 (-)
G454586 LOC106560561 non-coding downstream 4646 90178901 ~ 90187465 (-)
G454593 NA non-coding downstream 15858 90176042 ~ 90176253 (-)
G454591 NA non-coding downstream 18404 90173126 ~ 90173707 (-)
G454598 NA non-coding upstream 10434 90203903 ~ 90204135 (-)
G454631 NA non-coding upstream 86203 90279672 ~ 90280207 (-)
G454641 NA non-coding upstream 93583 90287052 ~ 90287267 (-)
G454653 NA non-coding upstream 107693 90301162 ~ 90301379 (-)
G454579 LOC106560561 other downstream 45798 90145825 ~ 90146313 (-)
G453915 NA other downstream 749734 89441584 ~ 89442377 (-)
G453823 NA other downstream 955503 89229699 ~ 89236608 (-)
mast2 LOC106560530 other downstream 1037848 89140981 ~ 89465997 (-)
G454875 NA other upstream 202378 90395847 ~ 90396236 (-)
G454900 NA other upstream 249627 90443096 ~ 90443490 (-)
G454882 NA other upstream 261212 90454681 ~ 90473614 (-)
LOC110524787 cfhr5 other upstream 692603 90818787 ~ 90902401 (-)
G455630 NA other upstream 863988 91057457 ~ 91060985 (-)

Expression


Co-expression Network