G454186


Basic Information

Item Value
gene id G454186
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90193701 ~ 90196816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU514218
GGCAGTTTGTATACCAGTTTGATAtgttcctttgatttttttttttgcaattgaGCATTTTAACATTTCAACTGCATAATTATAAAAACAGCTACTAATGTATCACCACTGATGATATTATTAAAACAAGAAaaaatacacacattatatttaaaaaaaaattgtcatcATTAATCAAAATGTGGTTTCCCCATAAATGATTTATTATGGGGACCTTGAATGCAGAATAGCGAGTTCCCCTCAGATGGAAGTAAACATCTATTTATTGGCCAGATATCTTAAATAGAATCCTGTTCTCTCCAATGTTAAGGGGCTTTGTGGATCAATAATGAATTGTTTGACCCTCTTTACAGAGACAGGTTgcatcaaatggcaccctattccctatatagtgcactactttgacctgggcccatagggcTATGATCAAAAGCAGTGCAGGGTTACAAGGACTGGCTGCCATTTGTGACTCACATATAGAGATAAAACAGACTCAAACAATAAGGGCTTGGGAGGAATGAACAGAAGACACTTATTTCAACgtaaataatagaaaaataattagaacataaaaaatgtaaaaacatatgGACAATTTTTACTTCTCATCAATTACACTGTTTTAGTCCATGAAACTTTAACGTTTTTTTTAGAGCGAGAATGAGCAAAAGCCATAATTTCATCTCAATGTATTAAAAACAGGGTTAATTTATGTCATCAATCATGAAAAACATGATATAGTACATATTCCACCATTATCTGCAAGTCCCGATAACCCATGTCAACTGAACAATCTAAACACCTGCCAAGGGCTGCTCAGAACATGGATGTCAGTAGCCGTTTCAGTTCAAAACAGACCACTTTCAGGAAAGCAATCAGCTACTTTGGCAACAGATGTGATCTACCAGTAAAGGCAGATAAAGCAGACAGCAAAATCAGGGTCCCACAATGCATGACATAAAAGCCAGGGGAAGTGTTTGGTTGTGCACCACAAAATACTGTCCTGCATGCTTGTATTTAAACCAAACACATTTCCTGAGTTCATACTCCAAATACTTGGGTCTTGTACAAAATAAATGTAAgagcactgagtgtacaaaacattatgaacacctgctctttccatgacagactgaccaggtgaaagctatgatcccttattgtagTCTCATGTTAAATCAACTTCActcatcagtgtagatgaaggggaggagccaggttaaaaggatttttaagccttgagacaacagAGACACGGacagtgtatgtgtgccattcagagggtgaatgagcaagaccaAATATTAAATGCATTTGaatgggatatggtagtaggtgccaagcgtACCGGTTTGTATcaggaactgcaacgctgctgtgtttttcatgcgcaacagtttcccgtgtatcaagaatggtccaccaccccaaaggacatccagccaacttgacaactgtgtgaagcattgaagacaacattggccagcatccctgtgcaatgctttcaacaccttgtagagtcccggacctgacgaattgaggctgtcctgagggtgcaactcaatattaggaaggtgttcttaatgttttgtaaactgaTGGCTTTTTAAAATACTGATCAATTATCATGAAGAGACCCAAAGTTCCATTTACAAATCACAATAGAAAAACCATGACACTTTAACAAACACAGGTTAAAtgtgggggtggcaggtagcctagtggttagagcgttgggctggtaaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgtaaataagaatttgtttaacTGACTCGCctctttaaataaaaaaatacctcaATGAAAGATACACCATGATTGACTAGCAGTGATAGCATACAAAATATACTGGTGAGGGAATGTGGCCCGACAGAGCAAAGAATACATCCAAGGCAAATTCTGTTCGGCAAAATACAAATAATCATAGGTGTTAGGGTTGGAAAATTTCGGAACCTTTAAATTAATTCCCTAGTTTTACCGGTTGGAGGATTCCTGGAATCAAGATGGAATAAATCCGGAATCCTACAAACacgatttctggaaaaccagggaatttattgaaagtttgCAACTTAGTGAAACTATTCTTATGTCCTGGAAGCATTACAAATGCATCCCTTACTAAACAATATTACAACAAAGTCTGACATGATAATGCCCTGTACATGATTCAGTGAGTGAGAGAACACTGTGGAATAGGCTCTCTCACTAAACCCATACTAGGACACCACTTAGACTGCATGCCCTTTACATTAGCTAAGTGGTAGGGTAGTGTTTTTACAGGAACACAGTCTAGGATTAATAACAGTGGTGCTAGTAGTAAAAGGGGGCCGTAATGCATCGTGGGTATTAATCCCTAActagggcaggcaggatgatggCTGGACCACCCCTGCTGGCAAAAACTTCCCCCACCCGCAAATCCACCCCGCTCCATCTGTGGCTGTGCTTTTCAggagcctccctccctctgcccccacgGGTCACAGAAGGGCAAATTAGGGATTTTCTGTGGAATTATAAGCTTTTGTTCCATCAGGAATTTTCTGATCAGCTTTTTAACAAAGACACCAGCCTATCAGAGCTTTAATTAAAAAAAGAGTAGCAGGGTAGACAAATAACTGTTATAAAATAGATTTTTCCTGAGAAAAACAAAGCCATACCTAAGAAGAGTTCTGTAGTATTGTGCTGGTGTGTGTTTGAGGGTctagagaaggaaaggaagggagTAAAAATACTAAAAATGATGCCAATTTGGCATGTGTTATGTGTTTGGGTGAATGTGTGAAAcagctgtatcagtgtgtgtgtgtgtgtctgtgtagggaGACATAGGGAAGAGAGATCTGAAAACAAGCAGAGACAGATAGGAGGGATCTTCTCTGTGACACGCTGTGATCTACTGGATCTCATCCTTGTGTTGTAATGTgctcctctccttctctgttagTTAGACAGTCTTCCTGGCTGTTAGTACTCTAACGATGCATCCCAGGCCACCTGCAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU514218 True 3063 lncRNA 0.40 3 90193701 90196816

Neighbor

gene id symbol gene type direction distance location
hmcn1 LOC106560561 coding upstream 118 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 346455 89813026 ~ 89847246 (+)
kifap3a kifap3 coding upstream 431352 89720438 ~ 89763740 (+)
LOC118964683 NA coding upstream 524488 89648309 ~ 89669213 (+)
LOC110524761 LOC106584012 coding upstream 1213812 88655985 ~ 88979889 (+)
ptgs2b ptgs2b coding downstream 68754 90265570 ~ 90272209 (+)
pdcb LOC106560557 coding downstream 115552 90312368 ~ 90326381 (+)
cfh cfh coding downstream 559339 90756155 ~ 90779026 (+)
LOC110524788 LOC106560550 coding downstream 612727 90809543 ~ 90814365 (+)
LOC118964684 NA coding downstream 650168 90846984 ~ 90848592 (+)
G454277 NA non-coding upstream 20131 90172890 ~ 90173570 (+)
G454257 NA non-coding upstream 72589 90120836 ~ 90121112 (+)
G454256 NA non-coding upstream 73817 90119653 ~ 90119884 (+)
G454253 NA non-coding upstream 76683 90116783 ~ 90117018 (+)
G454187 NA non-coding downstream 921 90197737 ~ 90203533 (+)
G454288 NA non-coding downstream 14327 90211143 ~ 90272444 (+)
G454322 NA non-coding downstream 73518 90270334 ~ 90270713 (+)
G454649 NA non-coding downstream 100974 90297790 ~ 90298515 (+)
G454699 NA non-coding downstream 173856 90370672 ~ 90374596 (+)
G453547 NA other upstream 593005 89599964 ~ 89600696 (+)
G453429 NA other upstream 807231 89385225 ~ 89386470 (+)
G452697 NA other upstream 1889252 88303307 ~ 88304449 (+)
G452673 NA other upstream 1970074 88223282 ~ 88223627 (+)
G452609 NA other upstream 2067834 88120399 ~ 88125867 (+)
G454751 NA other downstream 249879 90446695 ~ 90447956 (+)
G455168 NA other downstream 591702 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 797049 90993865 ~ 90994299 (+)
G455211 NA other downstream 864274 91061090 ~ 91062621 (+)
G455469 NA other downstream 1290929 91487745 ~ 91489990 (+)

Expression


Co-expression Network