G454649


Basic Information

Item Value
gene id G454649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90297790 ~ 90298515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU514716
tgcagacacacacatgatCAGTCACACAGAGGAAAATTGAAATCCAGACGTTCATAAAGCACATacccacaaacacatacacatatactgtagatagatgCAGAGACtcgtatactgtagatagatgcAGAGActtgtatactgtagatatattCAGAGACtcgtatactgtagatagatgcAGAGACtcgtatactgtagatagatgCAGAGACtcgtatactgtagatagatgcAGAGacttgtatactgtagatagatgcAGAGACTCGTAGATAGATGCAGAGacttgtatactgtagatagatgcAGAGACtcgtatactgtagatagatgcAGAGacttgtatactgtagatagatgcAGAGACtcgtatactgtagatagatgcAGAGACtcgtatactgtagatagatgcAGAGACtcgtatactgtagatagatgcAGAGACTctcatactgtagatacagtgccttgcgaaag

Function

NR:

description
hypothetical protein EH28_24508, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU514716 True 483 lncRNA 0.40 3 90297790 90298515

Neighbor

gene id symbol gene type direction distance location
ptgs2b ptgs2b coding upstream 25581 90265570 ~ 90272209 (+)
hmcn1 LOC106560561 coding upstream 104207 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 450544 89813026 ~ 89847246 (+)
kifap3a kifap3 coding upstream 535441 89720438 ~ 89763740 (+)
LOC118964683 NA coding upstream 628577 89648309 ~ 89669213 (+)
pdcb LOC106560557 coding downstream 13853 90312368 ~ 90326381 (+)
cfh cfh coding downstream 457640 90756155 ~ 90779026 (+)
LOC110524788 LOC106560550 coding downstream 511028 90809543 ~ 90814365 (+)
LOC118964684 NA coding downstream 548469 90846984 ~ 90848592 (+)
LOC118964685 NA coding downstream 579816 90878331 ~ 90880383 (+)
G454288 NA non-coding upstream 25346 90211143 ~ 90272444 (+)
G454322 NA non-coding upstream 27077 90270334 ~ 90270713 (+)
G454187 NA non-coding upstream 94257 90197737 ~ 90203533 (+)
G454186 NA non-coding upstream 100974 90193701 ~ 90196816 (+)
G454699 NA non-coding downstream 72157 90370672 ~ 90374596 (+)
G454698 NA non-coding downstream 76167 90374682 ~ 90378851 (+)
G454705 NA non-coding downstream 87654 90386169 ~ 90386387 (+)
G454709 NA non-coding downstream 95001 90393516 ~ 90393742 (+)
G454732 NA non-coding downstream 121260 90419775 ~ 90419990 (+)
G453547 NA other upstream 697094 89599964 ~ 89600696 (+)
G453429 NA other upstream 911320 89385225 ~ 89386470 (+)
G452697 NA other upstream 1993341 88303307 ~ 88304449 (+)
G452673 NA other upstream 2074163 88223282 ~ 88223627 (+)
G452609 NA other upstream 2171923 88120399 ~ 88125867 (+)
G454751 NA other downstream 148180 90446695 ~ 90447956 (+)
G455168 NA other downstream 490003 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 695350 90993865 ~ 90994299 (+)
G455211 NA other downstream 762575 91061090 ~ 91062621 (+)
G455469 NA other downstream 1189230 91487745 ~ 91489990 (+)

Expression


Co-expression Network