G454699


Basic Information

Item Value
gene id G454699
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90370672 ~ 90374596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU514776
GTTACATCGGTGCTAATTGAGGCCCCAGTTGTTCCACTGCGGTCAATAATCTCAAAGACTGCATGAAAATATTAGAATCCAGCTAGTGACTGACGCGCCTCAAATCTCACCTAgcctaatgctaatgctaatgctagccACCATTTAATGGTGATATGGAATTAAATACCAAAGCCTACATGTCCAAATATTCTATATTTAGTTTTTATTTTCTTGGACAGCCAAACTGAGATCAAAGATTAACATTGTACACAAGTCTTCCAACGTATCTGAGTTCATAGGGCAATATGTTGATGGTGACTTATTATCAGCAATcaggcccctgaggactggagttggccATCCctgatgtatatactgtattcataGCTCATCCTAATTTACCTACTACTGAACATACCATTTTCTGTCCAAATGATATACTGTCTCAACACACCACGTATTTCTATTGTGGACTCTGACACATGCTCACTGTAATGTATCTACTGTGGGTTGTTATTTCCTGATTTCTTGCCGTGATCATTTTTTGTGTGTATTTCTACTGTATTTGCAAGagattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacagtacattctactgtactgttggagctagtaacacaatacatcctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaaaacaagacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattctactatactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattctactgtactgttggagctagtaacacaatacattatactgtactgttggaactagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgcactgttggagctagtaacacaatacattatactgtactgttggaactagtaacacaatacattatactatactgttggagctagtaacacaagcatttcactgcactgttggagctagtaacacaatacattatactatactgttggagctagtaacacaatacattatactgtactgttggagctagtaacacaagacattctactatactgttggagctagtaacacaatacattatactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattatactatactgttggagctagtaacacaatacattatactgtactgttggagctagtaacacaagcatttcactgcactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctac
>TU514777
acacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattctactgtactgttggagctagtaaaacaagacattctactgtactgttggagctagtaaaacaatacattatactgtactgttggagatagtaacacaagacattctactgtactgttggagctagtaacacaatacattatactgtactgttggagctagtaacacaagacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaagacattatactgtactgttggagctagtaacacaatacattatactatactgttggagctagtaacacaagacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattctactgtactgttggagctagtaacacaatacattatactatactgttggagctagtaacacaatacattatactatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU514776 False 1891 lncRNA 0.37 3 90370672 90374102
TU514777 True 546 lncRNA 0.36 3 90372933 90374596

Neighbor

gene id symbol gene type direction distance location
pdcb LOC106560557 coding upstream 44291 90312368 ~ 90326381 (+)
ptgs2b ptgs2b coding upstream 98463 90265570 ~ 90272209 (+)
hmcn1 LOC106560561 coding upstream 177089 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 523426 89813026 ~ 89847246 (+)
kifap3a kifap3 coding upstream 608323 89720438 ~ 89763740 (+)
cfh cfh coding downstream 381559 90756155 ~ 90779026 (+)
LOC110524788 LOC106560550 coding downstream 434947 90809543 ~ 90814365 (+)
LOC118964684 NA coding downstream 472388 90846984 ~ 90848592 (+)
LOC118964685 NA coding downstream 503735 90878331 ~ 90880383 (+)
LOC118964686 NA coding downstream 535762 90910358 ~ 90912406 (+)
G454649 NA non-coding upstream 72157 90297790 ~ 90298515 (+)
G454288 NA non-coding upstream 98228 90211143 ~ 90272444 (+)
G454322 NA non-coding upstream 99959 90270334 ~ 90270713 (+)
G454187 NA non-coding upstream 167139 90197737 ~ 90203533 (+)
G454186 NA non-coding upstream 173856 90193701 ~ 90196816 (+)
G454698 NA non-coding downstream 86 90374682 ~ 90378851 (+)
G454705 NA non-coding downstream 11573 90386169 ~ 90386387 (+)
G454709 NA non-coding downstream 18920 90393516 ~ 90393742 (+)
G454732 NA non-coding downstream 45179 90419775 ~ 90419990 (+)
G454735 NA non-coding downstream 49135 90423731 ~ 90423990 (+)
G453547 NA other upstream 769976 89599964 ~ 89600696 (+)
G453429 NA other upstream 984202 89385225 ~ 89386470 (+)
G452697 NA other upstream 2066223 88303307 ~ 88304449 (+)
G452673 NA other upstream 2147045 88223282 ~ 88223627 (+)
G452609 NA other upstream 2244805 88120399 ~ 88125867 (+)
G454751 NA other downstream 72099 90446695 ~ 90447956 (+)
G455168 NA other downstream 413922 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 619269 90993865 ~ 90994299 (+)
G455211 NA other downstream 686494 91061090 ~ 91062621 (+)
G455469 NA other downstream 1113149 91487745 ~ 91489990 (+)

Expression


Co-expression Network