XLOC_023672 (lrrc4bb)


Basic Information

Item Value
gene id XLOC_023672
gene name lrrc4bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38369351 ~ 38384432 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046714
TAAGCAGAGCCAGTGCTGACTGTGATGATTCTGATGGCAAGCAGGAGACTCCCGTAGCAGCGTGCAGTCTGTGTGGATTACACTTTGATGCCACAAGATACCTGATTCCACCAGTTAATCGAAAGGGGCAGGACATGACTCAGTTGCCATGCAGGCTGCTATGGTAACAGGCTTTTCCAGCCCCTCCCCCCTCATCTGGTTGGTCCAACTTTTGTTGTGGCCACACCTCCTTGGACCTAGATTGGCCGAAGCCAGTCCCGCCTGCCCTGCTCTCTGTAGCTGTTCGAATCAAGCCAGTCGAGTGATCTGTACCAAAAAAAGCTTAAATGAAGTTCCACAGAGCATCTCGTCCAATACTCGATACCTCAACCTCCAGGAGAACTCCATACAGgtGATCAGGTCAGACACTTTCAAGCATCTAAATCATCTGGAAATTTTACAGTTGTCTAAAAACCAGATTCGTCAGATAGAAGTGGGAGCGTTCAATGGCCTTCCCAATCTTATCACCCTGGAGCTTTTTGACAACAGACTACCGCTGGTACCTTCACAGGCGTTCGAGTACCTGAGCAAGCTGCGTGAACTCTGGCTGAGGAACAACCCTATAGAGACCCTGCCAGCCTACGCATTCCACCGCGTGCCGTCACTGCGACGGCTAGATCTCGGGGAGCTGCGCAAACTCAGTTTCATCTCAGAAGCAGCATTTGAAGGGCTGCTGAACCTGCGCTTTCTGAATCTGGGTATGTGCGGGCTTAAGGATGTACCCAACTTGACACCTCTTGTGCGACTGGAGGAACTAGAGTTGTCGGGAAACCAACTTGGCGTGGTGCGTCCTGGATCGTTTCAAGGCCTGGTGTCTCTGCGCAAACTGTGGCTCATGCACTCTAGGATCTCGGTCATTGAGAGGAATGCATTTGATGACCTGAAGAACCTAGAGGAGCTCAATCTGTCTCATAATTCTCTGCATTCATTGCCTCATGATCTCTTCACTCCACTGCAGCAGCTGGAGCGTGTGCATCTGAACCACAACCCTTGGGTTTGCAACTGTGATGTGTTGTGGTTGAGTTGGTGGCTCAAGGAAACCGTACCTGATAACTCCACCTGTTGCGCACGCTGCCATGCCCCACCAGGCACTAAGGGCAGGTACATTGGGGATCTTGACCAGCGGGATTTCACCTGCTATGCTCCTGTGATCGTGGAGCCACCGACCGACCTGAACGTGACCGAGGGAATGGCAGCGGAGCTAAAATGCCGCACTGGGACATCCATGACATCTGTAAACTGGTTGACCCCCAATGGTACCTTGATGACCCATGGAGCCTACAAGGTCCGAATCTCAGTCCTTCACGATGGTACTTTGAATTTCACCAATGTGACCATGCAGGACACAGGACCATACACCTGTATGGTCACCAACTCTGCTGGCAACACCACAGCGACTGCTGTGCTGAACGTCTCTGCTCCTGACCCAGGCAACGGCTACAGCTACTTCACTACTGTTACAGTTGAAACCGTAGAGACGGGGCAGGAGGGACACGATTCGCCAGCTCGGCAGTTTGTCAACGAGACCTTTATTAGTTTTCCAGGACCGACGGCCGCATCTACATCAGCAGGGCCCACTGGCTCTATGCTGTCCTCCTTGTCACCACGAGCCACACGTGCACCAGATCGACCGTTCACTGTCTCCATCACGGATGTTGCCAACCTGTCAGGTCTTGAGGATGTAATGAAGACGACCAAGATCATCATCGGATGCTTTGTGGCCATCACCTTCATGGCGGCCGTGATGCTGGTCGTCTTCTACAAGCTCCGCAAGCAGCACCAGCTGCACAAACACCACGGTCCGGCACGGGCCATTGAGATTATCAATGTTGAAGATGAGATCGGATCTGCAGGGGGAGCTAGCGGCATCACTGGAGGGAGCACTGTCCACACGGGGGCAGGAACTGGTGGAGGAAGCGGACAGAGTCCGAGAATTCATGACCCTGAGATCATGACCCTGCCAAGCGTTGGGCAAGCAGACCACCTGAACCACTACTACAAAGCGCACCACTTTAACAACAACGTGCTGGGCTTGAACATGACCACTGGAATGCTCAACAACAAACCCAACCCTTCTTCTCAAAATCAGGCTTCGACCTTGAAAATGGGGCCTGCCGGTGACCTTGGCCCCAACCCAGGCTCGATCTCGCCTCCCTTGCCAATTCCCATCCCAATGGCGATGACTTTCCATGGATCTCTGAAAGGCCATAGTCACGTTCCCAATGTGCAGACTGAGCCGCTGTTGCTTTCGAACGGCTCTAAGGAGAGCGTTCAGGAGACCCAGATCTGA
>TCONS_00046715
GCTGGGTGCAGCATCCATCCCTCTGTACGGCCACGACGCGCACGAGCTGCCTGCATACACTCACCAAAATGCGCCAATAGGTTTGTACGCCTCATACCCCGGATAATCAAATTAGATTCgattttttacactttaaagcGAGCGATTGCATCGTTTTCGCCGGCGGTGGTATGATCTGTTAACTGTATATTCGCCGTTATTCACCGCGTCCGCGCGCACTGACGCGCTCCGGAGACACCGAGGCAAAAACCACCAGGAGCAGATCGTCGAGGAGAAAAGAAAAGgTTTCCACATGGATATGATGAGGATGGTGATCGTTTAGACGAGGATCTGGATGATGTGATGATGGCTGCGTGAGAAGAGAACGTAAGCAGAGCCAGTGCTGACTGTGATGATTCTGATGGCAAGCAGGAGACTCCCGTAGCAGCGTGCAGTCTGTGTGGATTACACTTTGATGCCACAAGATACCTGATTCCACCAGTTAATCGAAAGGGGCAGGACATGACTCAGTTGCCATGCAGGCTGCTATGGTAACAGGCTTTTCCAGCCCCTCCCCCCTCATCTGGTTGGTCCAACTTTTGTTGTGGCCACACCTCCTTGGACCTAGATTGGCCGAAGCCAGTCCCGCCTGCCCTGCTCTCTGTAGCTGTTCGAATCAAGCCAGTCGAGTGATCTGTACCAAAAAAAGCTTAAATGAAGTTCCACAGAGCATCTCGTCCAATACTCGATACCTCAACCTCCAGGAGAACTCCATACAGgtGATCAGGTCAGACACTTTCAAGCATCTAAATCATCTGGAAATTTTACAGTTGTCTAAAAACCAGATTCGTCAGATAGAAGTGGGAGCGTTCAATGGCCTTCCCAATCTTATCACCCTGGAGCTTTTTGACAACAGACTACCGCTGGTACCTTCACAGGCGTTCGAGTACCTGAGCAAGCTGCGTGAACTCTGGCTGAGGAACAACCCTATAGAGACCCTGCCAGCCTACGCATTCCACCGCGTGCCGTCACTGCGACGGCTAGATCTCGGGGAGCTGCGCAAACTCAGTTTCATCTCAGAAGCAGCATTTGAAGGGCTGCTGAACCTGCGCTTTCTGAATCTGGGTATGTGCGGGCTTAAGGATGTACCCAACTTGACACCTCTTGTGCGACTGGAGGAACTAGAGTTGTCGGGAAACCAACTTGGCGTGGTGCGTCCTGGATCGTTTCAAGGCCTGGTGTCTCTGCGCAAACTGTGGCTCATGCACTCTAGGATCTCGGTCATTGAGAGGAATGCATTTGATGACCTGAAGAACCTAGAGGAGCTCAATCTGTCTCATAATTCTCTGCATTCATTGCCTCATGATCTCTTCACTCCACTGCAGCAGCTGGAGCGTGTGCATCTGAACCACAACCCTTGGGTTTGCAACTGTGATGTGTTGTGGTTGAGTTGGTGGCTCAAGGAAACCGTACCTGATAACTCCACCTGTTGCGCACGCTGCCATGCCCCACCAGGCACTAAGGGCAGGTACATTGGGGATCTTGACCAGCGGGATTTCACCTGCTATGCTCCTGTGATCGTGGAGCCACCGACCGACCTGAACGTGACCGAGGGAATGGCAGCGGAGCTAAAATGCCGCACTGGGACATCCATGACATCTGTAAACTGGTTGACCCCCAATGGTACCTTGATGACCCATGGAGCCTACAAGGTCCGAATCTCAGTCCTTCACGATGGTACTTTGAATTTCACCAATGTGACCATGCAGGACACAGGACCATACACCTGTATGGTCACCAACTCTGCTGGCAACACCACAGCGACTGCTGTGCTGAACGTCTCTGCTCCTGACCCAGGCAACGGCTACAGCTACTTCACTACTGTTACAGTTGAAACCGTAGAGACGGGGCAGGAGGGACACGATTCGCCAGCTCGGCAGTTTGTCAACGAGACCTTTATTAGTTTTCCAGGACCGACGGCCGCATCTACATCAGCAGGGCCCACTGGCTCTATGCTGTCCTCCTTGTCACCACGAGCCACACGTGCACCAGATCGACCGTTCACTGTCTCCATCACGGATGTTGCCAACCTGTCAGGTCTTGAGGATGTAATGAAGACGACCAAGATCATCATCGGATGCTTTGTGGCCATCACCTTCATGGCGGCCGTGATGCTGGTCGTCTTCTACAAGCTCCGCAAGCAGCACCAGCTGCACAAACACCACGGTCCGGCACGGGCCATTGAGATTATCAATGTTGAAGATGAGATCGGATCTGCAGGGGGAGCTAGCGGCATCACTGGAGGGAGCACTGTCCACACGGGGGCAGGAACTGGTGGAGGAAGCGGACAGAGTCCGAGAATTCATGACCCTGAGATCATGACCCTGCCAAGCGTTGGGCAAGCAGACCACGAGCCGCTGTTGCTTTCGAACGGCTCTAAGGAGAGCGTTCAGGAGACCCAGATC
>TCONS_00046716
CGCCGGCGGTGGTATGATCTGTTAACTGTATATTCGCCGTTATTCACCGCGTCCGCGCGCACTGACGCGCTCCGGAGACACCGAGGCAAAAACCACCAGGAGCAGATCGTCGAGGAGAAAAGAAAAGGTACAGTGCATATTTGAGCAGATGCCCGATTTGAAACGCTGTGGAATTTGGTGATCGTTTAGACGAGGATCTGGATGATGTGATGATGGCTGCGTGAGAAGAGAACGTAAGCAGAGCCAGTGCTGACTGTGATGATTCTGATGGCAAGCAGGAGACTCCCGTAGCAGCGTGCAGTCTGTGTGGATTACACTTTGATGCCACAAGATACCTGATTCCACCAGTTAATCGTAAAAAAAGAAAGGGGCAGGACATGACTCAGTTGCCATGCAGGCTGCTATGGTAACAGGCTTTTCCAGCCCCTCCCCCCTCATCTGGTTGGTCCAACTTTTGTTGTGGCCACACCTCCTTGGACCTAGATTGGCCGAAGCCAGTCCCGCCTGCCCTGCTCTCTGTAGCTGTTCGAATCAAGCCAGTCGAGTGATCTGTACCAAAAAAAGCTTAAATGAAGTTCCACAGAGCATCTCGTCCAATACTCGATACCTCAACCTCCAGGAGAACTCCATACAGgtGATCAGGTCAGACACTTTCAAGCATCTAAATCATCTGGAAATTTTACAGTTGTCTA

Function

symbol description
lrrc4bb Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human LRRC4B (leucine rich repeat containing 4B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-44 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human LRRC4B (leucine rich repeat containing 4B).

Ensembl:

ensembl_id ENSDARG00000014792

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046714 False 2329 mRNA 0.53 3 38369351 38374744
TCONS_00046715 False 2444 mRNA 0.53 6 38369354 38384432
TCONS_00046716 True 692 processed_transcript 0.50 5 38371231 38384275

Neighbor

gene id symbol gene type direction distance location
XLOC_023671 zgc:91999 coding downstream 80468 38269088 ~ 38288883 (-)
XLOC_023670 NA coding downstream 117055 38241174 ~ 38252296 (-)
XLOC_023667 NA coding downstream 153869 38197838 ~ 38215482 (-)
XLOC_023669 NA coding downstream 156424 38211103 ~ 38212927 (-)
XLOC_023668 igl3v5 coding downstream 164215 38202298 ~ 38205136 (-)
XLOC_023673 CU681836.1 coding upstream 12140 38396572 ~ 38397488 (-)
XLOC_023674 CU681836.2 coding upstream 62448 38446880 ~ 38447958 (-)
XLOC_023675 FP102794.1 coding upstream 139561 38523993 ~ 38524619 (-)
XLOC_023676 NA coding upstream 151987 38536419 ~ 38548037 (-)
XLOC_023677 slc17a7b coding upstream 173557 38557989 ~ 38579066 (-)
XLOC_023665 dre-mir-735 misc downstream 191324 38177961 ~ 38178027 (-)
XLOC_023660 BX001030.1 non-coding downstream 269676 38098896 ~ 38099675 (-)
XLOC_023658 BX001030.2 non-coding downstream 276763 38085317 ~ 38092588 (-)
XLOC_023678 NA non-coding upstream 217585 38602017 ~ 38609746 (-)

Expression


Co-expression Network