G455158


Basic Information

Item Value
gene id G455158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90754282 ~ 90759245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU515283
gctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggagatggtgtgttcagggtgatgagctctgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagaggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctgcgcttttaacggacctctgagac
>TU515284
gctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggagatggtgtgttcagggtgatgagctctgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttgccactcatccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctccc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU515283 False 781 lncRNA 0.45 2 90754282 90759245
TU515284 True 468 lncRNA 0.44 2 90754282 90758935

Neighbor

gene id symbol gene type direction distance location
pdcb LOC106560557 coding upstream 427901 90312368 ~ 90326381 (+)
ptgs2b ptgs2b coding upstream 482073 90265570 ~ 90272209 (+)
hmcn1 LOC106560561 coding upstream 560699 89970059 ~ 90193583 (+)
swt1 swt1 coding upstream 907036 89813026 ~ 89847246 (+)
kifap3a kifap3 coding upstream 991933 89720438 ~ 89763740 (+)
LOC110524788 LOC106560550 coding downstream 50298 90809543 ~ 90814365 (+)
LOC118964684 NA coding downstream 87739 90846984 ~ 90848592 (+)
LOC118964685 NA coding downstream 119086 90878331 ~ 90880383 (+)
LOC118964686 NA coding downstream 151113 90910358 ~ 90912406 (+)
LOC110524786 LOC100136131 coding downstream 189137 90948382 ~ 90979079 (+)
G455156 NA non-coding upstream 2660 90751415 ~ 90751622 (+)
G455133 NA non-coding upstream 2977 90719306 ~ 90751305 (+)
G455125 NA non-coding upstream 48530 90704122 ~ 90705752 (+)
G455086 NA non-coding upstream 94743 90659232 ~ 90659539 (+)
G455082 NA non-coding upstream 97074 90656990 ~ 90657208 (+)
G455172 NA non-coding downstream 41211 90800456 ~ 90803052 (+)
G455173 NA non-coding downstream 67678 90826923 ~ 90828149 (+)
G455174 NA non-coding downstream 67943 90827188 ~ 90858751 (+)
G455176 NA non-coding downstream 69458 90828703 ~ 90829350 (+)
G455178 NA non-coding downstream 74435 90833680 ~ 90865252 (+)
G454751 NA other upstream 306326 90446695 ~ 90447956 (+)
G453547 NA other upstream 1153586 89599964 ~ 89600696 (+)
G453429 NA other upstream 1367812 89385225 ~ 89386470 (+)
G452697 NA other upstream 2449833 88303307 ~ 88304449 (+)
G452673 NA other upstream 2530655 88223282 ~ 88223627 (+)
G455168 NA other downstream 29273 90788518 ~ 90790211 (+)
G455203 LOC106560548 other downstream 234620 90993865 ~ 90994299 (+)
G455211 NA other downstream 301845 91061090 ~ 91062621 (+)
G455469 NA other downstream 728500 91487745 ~ 91489990 (+)
dda1 LOC106560571 other downstream 918860 91678060 ~ 91681757 (+)

Expression


Co-expression Network