G455181


Basic Information

Item Value
gene id G455181
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90854204 ~ 90893194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU515311
catggccagccgttgagaaatgcttgttgaagttttcgataatcatggatttatcggtggtgaccatgttacctagtctcagtgcagtgggcagctgggaggaggttgaGTTTGAGCTGGGAGGAGATTGAGTTTCAGACCAATATAGCCAAGTCAGAGGGAAATGCATTCCACTGTTCTTGATCTACTTTGTAAAGAGGTCATTTCTAGAGGATCTGTTTTCTTACCAATACACTCTAATATTCCAGACCATGTTCCCTCAGTACATGTGGCTTCACCCCACCAACCCCCGGTAGAGGGTTTGAACCCTACATTGCAGGAAGAGTATATCTTGCTATTCCTGGGATCAACAATCCTCTCATTTGACTGAACTAGGAATCCATTCATCACAGTTGGGTTGATACATGCTCCCTCTATTTCTGGGGGAAACAATGACATGAAATATTATAGAACACAATGTGACACATCAATGTTTTTAAATCCGGTTCTACAGCTGTAACGCTGAGTTCCTCCCGATTGACCCCGCTGCCAACGGTAGGGAGAACTCACAAGAGGGTCACGTGGATCACCACATGTTATCCCTACAATGATAGAGATGTTTAGTATTAGCATGAATCATACCAgtacagtaatacacagtgattACACTGTCTATACCTCCTTATAGCCTCAATATGGATGCATGCTCCCTTTATTTCTGGGAGGAACAATGGCAGGAAACATTACAGAACGCATTGTGACACATCGTTCAGTTAACAGCGCACATAGAGGACCTGTTCTACAAAGCATTACCATATCATTAGATTTTGGCCAAGCTGTCAGTTTGATAAAAGCACTGAACAGAGCAATATCTGGAAAACCAAATGGAAGCAAAGTGAGTGAACGTTCATACCATTACCAATTCCAAACCAAATCCTCAAATAGGGAATAACACAACAGGCTAAAATCGGATGCTTGATCTTTCCAGTAGCCTTAAACCTTCTGGATCAGTGTCTTGACTCTTATTCTCAGAGTTTTAGATGATTGAAATGTAAATGTCATCCTACCTTTACAGCCAAGTGTCTTGGTCCAGCCATTTGTAGTACAGGTAGCAGTAGGTCTGGTAGTACTGTCCAATAGTTCATAATTCATCTTACACTCATAAGTGAGCAGATCATTGATTTTGTATCTTGTTTTCGGGTCTTTAATCACAGCATTTAGGATATCTGGCTTGTCACATGTAATCTCT
>TU515312
catggccagccgttgagaaatgcttgttgaagttttcgataatcatggatttatcggtggtgaccatgttacctagtctcagtgcagtgggcagctgggaggaggttgaGTTTGAGCTGGGAGGAGATTGAGTTTCAGACCAATATAGCCAAGTCAGAGGGAAATGCATTCCACTGTTCTTGATCTACTTTGTAAAGAGGTCATTTCTAGAGGATCTGTTTTCTTACCAATACACTCTAATATTCCAGACCATGTTCCCTCAGTACATGTGGCTTCACCCCACCAACCCCCGGTAGAGGGTTTGAACCCTACATTGCAGGAAGAGTATATCTTGCTATTCCTGGGATCAACAATCCTCTCATTTGACTGAACTAGGAATCCATTCATCACAGTTGGGTTGATACATGCTCCCTCTATTTCTGGGGGAAACAATGACATGAAATATTATAGAACACAATGTGACACATCAATGTTTTTAAATCCGGTTCTACAGCTGTAACGCTGAGTTCCTCCCGATTGACCCCGCTGCCAACGGTAGGGAGAACTCACAAGAGGGTCACGTGGATCACCACATGTTATCCCTACAATGATAGAGATGTTTAGTATTAGCATGAATCATACCAgtacagtaatacacagtgattACACTGTCTATACCTCCTTATAGCCTCAATATGGATGCATGCTCCCTTTATTTCTGGGAGGAACAATGGCAGGAAACATTACAGAACGCATTGTGACACATCGTTCAGTTAACAGCGCACATAGAGGACCTGTTCTACAAAGCATTACCATATCATTAGATTTTGGCCAAGCTGTCAGTTTGATAAAAGCACTGAACAGAGCAATATCTGGAAAACCAAATGGAAGCAAAGTGAGTGAACGTTCATACCATTACCAATTCCAAACCAAATCCTCAAATAGGGAATAAAACAGGCTAAAATCGGATGCTTGATCTTTCCAGTAGCCTTAAACCTTCTGGATCAGTGTCTTGACTCTTATTCTCAGAGTTTTAGATGATTGAAATGTAAATGTCATCCTACCTTTACAGCCAAGTGTCTTGGTCCAGCCATTTGTAGTACAGGTAGCAGTAGGTCTGGTAGTACTGTCCAATAGTTCATAATTCATCTTACACTCATAAGTGAGCAGATCATTGATTTTGTATCTTGTTTTCGGGTCTTTAATCACAGCATTTAGGATATCTGGCTTGTCACATGTAATCTCTGAA
>TU515310
ACCATATCATTAGATTTTGGCCAAGCTGTCAGTTTGATAAAAGCACTGAACAGAGCAATATCTGGAAAACCAAATGGAAGCAAAGTGAGTGAACGTTCATACCATTACCAATTCCAAACCAAATCCTCAAATAGGGAATAACACAACAGGCTAAAATCGGATGCTTGATCTTTCCAGTAGCCTTAAACCTTCTGGATCAGTGTCTTGACTCTTATTCTCAGAGTTTTAGATGATTGAAATGTAAATGTCATCCTACCTTTACAGCCAAGTGTCTTGGTCCAGCCATTTGTAGTACAGGTAGCAGTAGGTCTGGTAGTACTGTCCAATAGTTCATAATTCATCTTACACTCATAAGTGAGCAGATCATTGATTTTGTATCTTGTTTTCGGGTCTTTAATCACAGCATTTAGGATATCTGGCTTGTCACATGTAATCTCTGAA

Function

NR:

description
complement factor H precursor

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU515311 False 1228 lncRNA 0.42 2 90854204 90861821
TU515312 False 1228 lncRNA 0.42 3 90854204 90893194
TU515310 True 441 lncRNA 0.38 2 90886347 90893194

Neighbor

gene id symbol gene type direction distance location
LOC118964684 NA coding upstream 5612 90846984 ~ 90848592 (+)
LOC110524788 LOC106560550 coding upstream 39839 90809543 ~ 90814365 (+)
cfh cfh coding upstream 75178 90756155 ~ 90779026 (+)
pdcb LOC106560557 coding upstream 527823 90312368 ~ 90326381 (+)
ptgs2b ptgs2b coding upstream 581995 90265570 ~ 90272209 (+)
LOC118964686 NA coding downstream 17164 90910358 ~ 90912406 (+)
LOC110524786 LOC100136131 coding downstream 55188 90948382 ~ 90979079 (+)
LOC110523038 LOC106560551 coding downstream 111366 91004560 ~ 91072132 (+)
LOC118964687 NA coding downstream 179612 91072806 ~ 91075802 (+)
LOC118964734 NA coding downstream 391044 91284238 ~ 91285565 (+)
G455176 NA non-coding upstream 24854 90828703 ~ 90829350 (+)
G455173 NA non-coding upstream 26055 90826923 ~ 90828149 (+)
G455172 NA non-coding upstream 51152 90800456 ~ 90803052 (+)
G455158 NA non-coding upstream 94959 90754282 ~ 90759245 (+)
G455156 NA non-coding upstream 102582 90751415 ~ 90751622 (+)
G455195 NA non-coding downstream 73239 90966433 ~ 90970085 (+)
G455196 NA non-coding downstream 86896 90980090 ~ 90980414 (+)
G455197 NA non-coding downstream 88060 90981254 ~ 90981462 (+)
G455199 NA non-coding downstream 91886 90985080 ~ 90985969 (+)
G455200 NA non-coding downstream 93231 90986425 ~ 90986644 (+)
G455168 NA other upstream 63993 90788518 ~ 90790211 (+)
G454751 NA other upstream 406248 90446695 ~ 90447956 (+)
G453547 NA other upstream 1253508 89599964 ~ 89600696 (+)
G453429 NA other upstream 1467734 89385225 ~ 89386470 (+)
G452697 NA other upstream 2549755 88303307 ~ 88304449 (+)
G455203 LOC106560548 other downstream 100671 90993865 ~ 90994299 (+)
G455211 NA other downstream 167896 91061090 ~ 91062621 (+)
G455469 NA other downstream 594551 91487745 ~ 91489990 (+)
dda1 LOC106560571 other downstream 784911 91678060 ~ 91681757 (+)
G456139 LOC106560602 other downstream 1049960 91943154 ~ 92000758 (+)

Expression


Co-expression Network