G455195


Basic Information

Item Value
gene id G455195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 90966433 ~ 90970085 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU515326
tgaatccagcctgtcttGTATGAGGCTGAATCCAGCGTTTCTAGTATGGGGATGAATCCAGCATGtctagtatggggctgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggttgaatccagcctgtctagtatagtgctgaatccagcctgtctataaTGGGGatgaatccagcctgtctagtatggggttgaatccagcctgtctagtatggggaTGAATCCAGCCTGTCTTGTTTGaggctgaatccagcctgtcttGTATGAGGCTGAATCCAACGTTTCTAGTATGGGGatgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggtTGATTCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggttgaatccagcctgtctagtatggggttgaatccagcctgtctagtatggagctgaatccagcctgtctagtatggggttgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggtTGATTCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcGTTTCTAGTATGGTGatgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggtTGAATCCAGCCCATCTAGTATGGGGTTGAATCCAGCCCATCTAGTACGGGGTTGAATCtagcctgtctagtatggggctgaatccagcctgtccagtatagtgctgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCATGtctagtatggggctgaatccagcctgtctagtatgggGCTGAATCCAGCCTTTCTtgtatggggctgaatccagcctgtccagtATGGGgttgaatccagcctgtctagtatggggctgaatccagcctgtctatTATGGGGatgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCATGTCTAGTATGGGGCCaaatccagcctgtctagtatggggatgaatccagcctgtccagtATAGGGCTGAATCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtacGGGGTTGAATCtagcctgtctagtatggggctgaatccagcctgtccaTTATGGGgttgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCATGtctagtatggggctgaatccagcctgtctagtatggggatgaatccagcctgtccagtATAGGGCTGAATCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggtTGAATCCAGCCTCTTAAATGGGATGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggttgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggaTGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtatggggctgaatccagcctgtctagtacGGGGTTGAATCCAGCACATCTAGTATAGtgctgaatccagcctgtctagtatggggatgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggaTGAATCCAGCGTTtctagtatggggctgaatccagcctgtctagtataGGGTTGAATCCTGCCCGtctagtatggggctgaatccagcccgtctagtatggggctgaatccagcctgtccagtatagggctgaatccagcctttcttgtatggggctgaatccagcctgtctagtataGTGCTGAATCCAGCCTTTCTtgtatggggctgaatccagcctgtccagtatagggctgaatccagcctgtccagtATAGTGCTGAATCAATCTTGTCTAGTATGGTgctgaatccagcctgtccagtatagggctgaatccagcctgtccagtATAGGGCTGAATCAATCTTGtctagtatggggctgaatccagcctgcCGAGTATGGTGCTGAATCCGTTCTGTCTAGTATGGGCTGAATCCAGCCTGCCGagtatggggctgaatccagcctgcCTAGTATGGTGCTGAATCCGTTCTGTCTAGTAtgggctgaatccagcctgtcttAAATGGACTGAATACAGCCTGCCTAGTATGGGGTTGAATCCAGCCTGTCAagtatggggctgaatccagGCTGTCTAGTATGGGGTTAAATCCAGCCTGCCTAGTATGGGGCCAAATCCAGCCGGTCTAGTATGGGGTTAAATCCAGCCTGCCTAGTATGGGGCCaaatccagcctgtctagtatggggtTAAATCCAGCCTGCCTAGTATGGGGCcgaatccagcctgtctagtctggggctgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggctgaatccagcatgcctagtatggggctgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggctgaatccagcaTGCCTAGTATAGGgttgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggctgaatccagcctgtctagtatggggctgaatccagcctgcctagtatggggctgaatccagcctgtctagtatggggaTGAATCCAGCCCGTCTAGTACGGGGTTGAATCCAGCCCATCTAGTATAGGGTTGAATCCAGCCCGTCTAGTACGGGGTTGAATCTAGCCTGCCTAGTATAGTGCTGAATCCAGCCTTTCTtgtatggggctgaatccagcctgtccagtatagggctgaatccagcctgtccagtatagggctgaatccagcctgtccagtATAGTGCTGAATCAATCTTGtctagtatggggctgaatccagcctgcCTAGTATGGTGCTGAATCCGTTCTGTCTAGTATGGGCTGAATCCAGCCTGCCGagtatggggctgaatccagcctgcCTAGTATGGGGCCAAATCCAGCCGCTCTAGTAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106588102

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU515326 True 3393 lncRNA 0.50 3 90966433 90970085

Neighbor

gene id symbol gene type direction distance location
LOC118964686 NA coding upstream 54027 90910358 ~ 90912406 (+)
LOC118964685 NA coding upstream 86050 90878331 ~ 90880383 (+)
LOC118964684 NA coding upstream 117841 90846984 ~ 90848592 (+)
LOC110524788 LOC106560550 coding upstream 152068 90809543 ~ 90814365 (+)
cfh cfh coding upstream 187407 90756155 ~ 90779026 (+)
LOC110523038 LOC106560551 coding downstream 34475 91004560 ~ 91072132 (+)
LOC118964687 NA coding downstream 102721 91072806 ~ 91075802 (+)
LOC118964734 NA coding downstream 314153 91284238 ~ 91285565 (+)
LOC110524795 LOC106560563 coding downstream 368762 91338847 ~ 91561585 (+)
LOC110524798 NA coding downstream 611886 91581971 ~ 91616915 (+)
G455182 NA non-coding upstream 53814 90882312 ~ 90912619 (+)
G455181 NA non-coding upstream 73239 90854204 ~ 90893194 (+)
G455178 NA non-coding upstream 101181 90833680 ~ 90865252 (+)
G455174 NA non-coding upstream 107682 90827188 ~ 90858751 (+)
G455176 NA non-coding upstream 137083 90828703 ~ 90829350 (+)
G455196 NA non-coding downstream 10005 90980090 ~ 90980414 (+)
G455197 NA non-coding downstream 11169 90981254 ~ 90981462 (+)
G455199 NA non-coding downstream 14995 90985080 ~ 90985969 (+)
G455200 NA non-coding downstream 16340 90986425 ~ 90986644 (+)
G455202 NA non-coding downstream 22229 90992314 ~ 90993164 (+)
G455168 NA other upstream 176222 90788518 ~ 90790211 (+)
G454751 NA other upstream 518477 90446695 ~ 90447956 (+)
G453547 NA other upstream 1365737 89599964 ~ 89600696 (+)
G453429 NA other upstream 1579963 89385225 ~ 89386470 (+)
G452697 NA other upstream 2661984 88303307 ~ 88304449 (+)
G455203 LOC106560548 other downstream 23780 90993865 ~ 90994299 (+)
G455211 NA other downstream 91005 91061090 ~ 91062621 (+)
G455469 NA other downstream 517660 91487745 ~ 91489990 (+)
dda1 LOC106560571 other downstream 708020 91678060 ~ 91681757 (+)
G456139 LOC106560602 other downstream 973069 91943154 ~ 92000758 (+)

Expression


Co-expression Network