XLOC_023676


Basic Information

Item Value
gene id XLOC_023676
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38536419 ~ 38548037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046720
CCGCATTGCTTCGATGTGTTGCGTTTTTATTCAGGCACCAGAAAGTGGCTCTTTCTGCATCTTTGAGTTCTGCAAAGATAACAGCCCTCTTCAACTTCTTATTAACATCAATTCTATCTAATTTGAATTCCCTCTTGCCACGAAACGCAAAACACTTCCAGTTGTGGAGTTCTTCAGCATCGTCCACCTGCAGCACCAGGTTTCTTCCTTCTCCTTTAGATATCACAGAGCCTCCTACAGATGGGGAGAGCTGAGCAAGAGCCTCCAGCACTGAGAGACACAGAGATCATGAGAAACAGCAGGAGGAACAGACCATTGTGGATTTACATTTAGGATGGTGTTCATACCCAGTACAGTGAGGGGGACCGGATCACTCTTCTCTCCGTTCTGCTCACATTCATATTGCCCATTGTTGTGTGGTGTCACTGTGATGAGAGTGACGTCGTCTCCAACATACACCTGTGGGAATCTCGGCCGGAGAGACACTAAGAGAGGAAAAACACACATGAGAGAGAAACGTCTCGAACAGGAGGAGTCTCCCTTGTTTGTTCTCAATCTCCTATGTCTGCTCGGACCTTCACAAAAAACTACCACATGATCTTCCTTGGACCAAGAGGAAGCTCCTTATGAATGAGGAACTTCCTACACACAGATATTATATACAAACGGTCTGCAGATCTGTGCTGGGTTTTGCCAATGATGTGCATATAATAGTTTAGTTTTGACATTAAATGTTTTGAACTGATCATCTTCAGAAACTGAACTTCACTGCATGCCCTGTGTCGATGGTTTGGTCATATGCGCATTCTGAAGATGAAGCGTGCGAACAGAACTCCTTACAATTCATCATTCAATGTATGAAATGAAACGTGGGTTCATTTACCTACTGGTTTCTGTCCATTGTCTTCCTTTATGAGCACCAAAAACACTGAAACAAAAAAGATGAATCAGGATGAAGAATTGgtgtctttattttaaaaagctttgAACTGAGACGGCCACACCCAGGCAGTTCTGGGAGAAAATCACATTTGGCTGTGTATGCATTtacttattcatgtatttatttaaaacttgctCAAATTAACTGTAAGAACAtcttaaaatcacattaaatatatgaaataaataaattcaaa
>TCONS_00047262
TGCTGTCCTCTGTGTATTTTTCATCAGATTTAACACAAACGAATACAAAATATGTAACAGAGCTTTCGCGAAGCTTCTCGCTAGTTCAGTGTCATGACGTTTACTTCAAGCGGGAACTTTTTAACGGACGTTTGGCAGATGATGACCTGAAGCGGAGGTTTGTACCATCAGCGGGCCACACACCTGAGAGCCACAGAATCACCCAGCAGTGCTGGAGCAGCTGGAGGCTCCAACATCACCAGTTTATCTGAAACACACAGAAGAATATACAGAGCCTCCTACAGATGGGGAGAGCTGAGCAAGAGCCTCCAGCACTGAGAGACACAGAGATCATGAGAAACAGCAGGAGGAACAGACCATTGTGGATTTACATTTAGGATGGTGTTCATACCCAGTACAGTGAGGGGGACCGGATCACTCTTCTCTCCGTTCTGCTCACATTCATATTGCCCATTGTTGTGTGGTGTCACTGTGATGAGAGTGACGTCGTCTCCAACATACACCTGTGGGAATCTCGGCCGGAGAGACACTAAGAGAGGAAAAACACACATGAGAGAGAAACGTCTCGAACAGGAGGAGTCTCCCTTGTTTGTTCTCAATCTCCTATGTCTGCTCGGACCTTCACAAAAAACTACCACATGATCTTCCTTGGACCAAGAGGAAGCTCCTTATGAATGAGGAACTTCCTACACACAGATATTATATACAAACGGTCTGCAGATCTGTGCTGGGTTTTGCCAATGATGTGCATATAATAGTTTAGTTTTGACATTAAATGTTTTGAACTGATCATCTTCAGAAACTGAACTTCACTGCATGCCCTGTGTCGATGGTTTGGTCATATGCGCATTCTGAAGATGAAGCGTGCGAACAGAACTCCTTACAATTCATCATTCAATGTATGAAATGAAACGTGGGTTCATTTACCTACTGGTTTCTGTCCATTGTCTTCCTTTATGAGCACCAAAAACACTGAAACAAAAAAGATGAATCAGGATGAAGAATTGgtgtctttattttaaaaagctttgAACTGAGACGGCCACACCCAGGCAGTTCTGGGAGAAAATCACATTTGGCTGTGTATGCATTtacttattcatgtatttatttaaaacttgctCAAATTAACTGTAAGAACAtcttaaaatcacattaaatatatgaaataaataaattcaaa
>TCONS_00047263
GAATAACTGCTGTGCAAACACACTCTAGTTAAGCTCATCTGAATTACACAAAACACTATGCAGAACAGTATTCTTGTGCAATCAACTAAAATGAATGACTAACCAGACAAATCAGCAATGACTTGTGGTGAACGGAGTGAGTTTGATCAAATACCCCAATTTTCCATGAATGAAGAAAGATAGAAATAGACAGTtgctttttattaaatgtttattattgtatttagcCTTCAACTACAAAACTGTGGACAATCTAATATACATCCACAATTTAACAAGCACAAAATGCGTTATCATAGTGAGTATAAAATGcttcataaaaacaaaatacttaCAATAAAATACATGACACAGATTTAAGATTGCATACACGATTGTGCAAATAATGATACAAATGCTGAGAAATATTACGTTTCTAATATTAAACAAACCAAATTAGTAAAAAGCTTGgtttaaatggatatatttagCTCATGTGCAGTTTTCTGCTATCCAGGCGCAAACTTTCAGATTTCGGTCTAATTCTGTCTCGTTATACGCAGAACGGATGAATTATTACATGaagaaagaaaatgtgtctgAATTGTGACCGTGTTTGTGAATATACAAATACAGTCTGTGTAGTAGGCTAGTTtgctgtgtatttatatgtatttaaaatatagactttttattttataatgtttatatttatgtaatgtaCTTAATTGAATTGTATTACCAAAAAGATGTTTTTGTTCTAACTAGATGTAGACTGAGTTATGATAGAAGAAATAAAATAACTCATTTACTACAGGAAAGAAAAATATTCTatgataaaataatgtttttatgttttctttCAGGTGTAAATTAACTGGAATCAGATCTGAATGTGAGATTTTGATAAAAATGATGTTTAAGCCTCGATCACCAGCACCTCTTATTCAAATGAACACTCGACCTTCCTCCAAAAATACACACTTTCTTATGAACTCTGCTGTCCTCTGTGTATTTTTCATCAGATTTAACACAAACGAATACAAAATATGTAACAGAGCTTTCGCGAAGCTTCTCGCTAGTTCAGTGTCATGACGTTTACTTCAAGCGGGAACTTTTTAACGGACGTTTGGCAGATGATGACCTGAAGCGGAGCTGTGAGCTGTTTAAGAGAAAGTGAGCAGTGTGAGAGACTAGCATCAGGTACACTTTAGAATCTTCCTCCTTCTCTGCAGCGGTTGCACTGATGTAGCTGTGCCTGTAGGTGGCGTGGCAGTGGCCACACACCTGAGAGCCACAGAATCACCCAGCAGTGCTGGAGCAGCTGGAGGCTCCAACATCACCAGTTTATCTGAAACACACAGAAGAATATACAGATATCACAGAGCCTCCTACAGATGGGGAGAGCTGAGCAAGAGCCTCCAGCACTGAGAGACACAGAGATCATGAGAAACAGCAGGAGGAACAGACCATTGTGGATTTACATTTAGGATGGTGTTCATACCCAGTACAGTGAGGGGGACCGGATCACTCTTCTCTCCGTTCTGCTCACATTCATATTGCCCATTGTTGTGTGGTGTCACTGTGATGAGAGTGACGTCGTCTCCAACATACACCTGTGGGAATCTCGGCCGGAGAGACACTAAGAGAGGAAAAACACACATGAGAGAGAAACGTCTCGAACAGGAGGAGTCTCCCTTGTTTGTTCTCAATCTCCTATGTCTGCTCGGACCTTCACAAAAAACTACCACATGATCTTCCTTGGACCAAGAGGAAGCTCCTTATGAATGAGGAACTTCCTACACACAGATATTATATACAAACGGTCTGCAGATCTGTGCTGGGTTTTGCCAATGATGTGCATATAATAGTTTAGTTTTGACATTAAATGTTTTGAACTGATCATCTTCAGAAACTGAACTTCACTGCATGCCCTGTGTCGATGGTTTGGTCATATGCGCATTCTGAAGATGAAGCGTGCGAACAGAACTCCTTACAATTCATCATTCAATGTATGAAATGAAACGTGGGTTCATTTACCTACTGGTTTCTGTCCATTGTCTTCCTTTATGAGCACCAAAAACACTGAAACAAAAAAGATGAATCAGGATGAAGAATTGgtgtctttattttaaaaagctttgAACTGAGACGGCCACACCCAGGCAGTTCTGGGAGAAAATCACATTTGGCTGTGTATGCATTtacttattcatgtatttatttaaaacttgctCAAATTAACTGTAAGAACAtcttaaaatcacattaaatatatgaaataaataaattcaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046720 False 1139 lncRNA 0.41 3 38536419 38538430
TCONS_00047262 False 1183 lncRNA 0.42 5 38536419 38547060
TCONS_00047263 True 2275 lncRNA 0.37 7 38536419 38548037

Neighbor

gene id symbol gene type direction distance location
XLOC_023675 FP102794.1 coding downstream 11800 38523993 ~ 38524619 (-)
XLOC_023674 CU681836.2 coding downstream 88461 38446880 ~ 38447958 (-)
XLOC_023673 CU681836.1 coding downstream 138931 38396572 ~ 38397488 (-)
XLOC_023672 lrrc4bb coding downstream 151987 38369351 ~ 38384432 (-)
XLOC_023671 zgc:91999 coding downstream 247536 38269088 ~ 38288883 (-)
XLOC_023677 slc17a7b coding upstream 9952 38557989 ~ 38579066 (-)
XLOC_023678 NA coding upstream 53980 38602017 ~ 38609746 (-)
XLOC_023679 slc6a16b coding upstream 70465 38618502 ~ 38644937 (-)
XLOC_023680 si:ch1073-164k15.3 coding upstream 100848 38648885 ~ 38657683 (-)
XLOC_023681 NA coding upstream 117041 38665078 ~ 38671333 (-)
XLOC_023665 dre-mir-735 misc downstream 358392 38177961 ~ 38178027 (-)
XLOC_023670 NA non-coding downstream 284123 38241174 ~ 38252296 (-)
XLOC_023667 NA non-coding downstream 320937 38197838 ~ 38215482 (-)
XLOC_023684 NA non-coding upstream 369609 38917646 ~ 38933203 (-)
XLOC_023685 NA non-coding upstream 484139 39032176 ~ 39091863 (-)
XLOC_023687 NA non-coding upstream 602585 39150622 ~ 39155087 (-)

Expression


Co-expression Network