XLOC_023685


Basic Information

Item Value
gene id XLOC_023685
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 39032176 ~ 39091863 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047265
GTCGTTTTTACTCACTTGATGCAGCGTTTAAGTGCTTTAGGATCTGCAAAGTCAGATGGTAGTTTGGAGCATCTGGCACAGAATTTAAAGGTTTCTTCTAGTTTTTGAAACATTTCTTTGTGAGAGCGAAATCCCACCTTGCCTTTGCCTTCCAGCGCTTCcctgaaaaaaagagaaatattgaCAACCTGTCAATGCTGCACACTCATTTGACCCAACAgaatgtgtgtaagtgtgtgtgtgtgtgtgtgtgtttctcacctGTATTCTTTGTAGTCCTTCATGTTCAGTTTGTCTAAGATGACTTTGGAAAGGCCAGGAACTTTATAGTCCATAGTATAAAAACCGAACTGATCTGAGTAAACGCTGTCCGCACTGGGATTAAAAGAGCCTGGTAGAGCTGGAACTGGACCGGCCATTCTAAATGATcgtgtgtcaAAGCGGCCGTGGTCTGTGCAGTCCGTCAGTGTCTGGAGTGAGCTGGGGCGAGTGTGTGGCTTTACTGGATGTCCAGTCGCCCAAAGACGCCTGTGCTGCTTTCCTGTGAGCCAGTCTGTGTGTGATGGAGAAACCGGCGTTTCCCTCCAGCTGAGACAGAACCACCAGAACCTGCCTGCAACACATGAAGGAGGAGGAACGCTGTCGATGGTCTTCAGGCTGCCGCGTGTCGACACCACATTAAAACTGTCTGTACAGTCACAGGACACATGGAGGTAGTACTTTGGGTGACGATTCTCCACCACAACGATAAGCCCCGCCCACCCGTGGGTCAGGATGATGGCGTCTGCGAGTGTGGTGGACGTGGCCTCCACCTGCTCCACCATCACCTGTCTGGAGCTGTAGATGGCCAAAATGTACCCTGGGAAATCCTGACTGGGTCTGCGAGCATTGGTGTTGAGGCTCCGCTGAGGTCCATCTGCCAGTGGTTGAAGGCACAGCAAACCACGGCGTACTCGCCCGGCTCCAGCATCACATCGCAGCCTACAAACTTCTTGACCGCACGCTTGCTGTGTGCCAGCAGACGACCCAGAACCAGCTTATTCCCGTTACTGAACGAGGCCCGGAAGACCATGATGCACAAGTCCAGCAGAAGACGCCTTCACTGCTGCCGTGAGCCATGAGCTCGTGCCGGAGGTGCTGCGGCCAGTCGCTCCACTCGTCCGACCAGGAGCCGTTCCAGGAGAACCGGCCCCACGGGTTCCTGAGACGCAGCAGTCTGAAACAGCACCAATCAACATTATGTGGACATCAGATATTAGACGCCATCTTATGAGTCAGCAGTTTCCCAGAAGGCCTTGCAGAATATCTGAGGGACGGGGTGTCCTGAACACAGACCACTTCACACCGCGATCCTTAAAGTTATTGCAGTTGATCTCATGAGGACGGAGCCACTTCTTGATCCGCTGCTGGACGCTGTCGTTTTCCGGGAAACCGACCGATCGAGGACCAGGAGGAAAACTGTCATCCACGAAATTCACTGCGTTCTGCAACAAACACACCACAGCACTAAGCTGACGATATTTTCCCACAATTCCTTGGCCTCTCCCTCATCCGTGCGCCTGCGGGCCTCCAcatgcatgctctccctgcgctTGAGCGGCTTCCCGGTTTTCCTCAGATTCAGGTACTGCTGCGGCGTGTGACATGCGGCGCAGTGCTTCATCCTTCCCTCGTTCAGCAGCGTGCAGGCAGGACACGTCCACTGGCACACACTCTTGTCCTGCGCCGACGGGGACGAAATGGAGGACGAGGAGGAGGTGGAGGTAAAGGCACGCGGGTGGGAGTGCGGTTGTTTCCGAGAGCATGATGAGCAGCTGGACGGCTCCGAGAAACCATGCAGTTTGGAGGATCCGCAGGCCGTACAGTGACCCGCGCCCGTCGGGTTGCGCAGCGTACATTTGGAGCACGCCCAGGAGCTGAAGTCTGGGCTGGATGGCGACGCTGGCGTGAAACGCACTGATTCGCCGAGCACATCGATGACATCACCACCCGAACCCGGCCTCGACCCTCTGCATGCATCGCAGCGCCCGGCAGACGATGAAGGAGGAGCTGTTGGGGCGGAGCATCCGGGGCACTTCCAGGAAGGCGGAGATGTGACTGGAGGGGTGGGGTTATtaggctcctcctcctccagcacGCTGAGGCGCTTGACTGGGTAATTACCTGATGGTGGGAGGGGTTTAGGCTTGGTTGGTGGGCAGGATGAAGGTGAGGTTGGTGAGGGGCCAGGGTTTGGAGGCCGCCCAGGGGGCGGGACTTCTCTTCGGCTGCGAGGCACAGGATTATTTTGAAGTGAGGACAACGAAGGGGGCAGAAACGGGACAGGGGGTGGAGATGGGGTTTCAGACGGTGCCTGCGGTGGAGAATCTTCGGTTAGATCGATAAGAAGAGGTGCAGATGCTCCTGCCGTTTGCGTAGGAAACCCTGCCACAGGTGTGCGCACTTCTGGTACCACTAGAGCCTCCGGAGGGATTTTCGGTAAGGAAAGTTTCCTCGGACCACCACACGCTGAACACGACAACGCAACTGGAGTATTCACTAAAGTACAACGAGGACACGCCCACTCTGAGGAGCCCTGCCCACTCATAGGCACCTCCCCATTGGACTCTATGCACTGGGATTCCCCATTCGCCACCTGACCTTTAGGTTCAGGGCTAGAGGCGAGGTCAATCGGAGTGGGCGGGGTTTGTTTGGGTGGGAGGGGTCCGTTGGGTGTTACCGGAGCAGCTCCACACACAGAACAGGAGCCTAACCCGTGGTGGTTGGTGAGAGTGCAGCGTGGGCAGGACCAGCGGGGTTCCTCTGCACTGCTGAGGCGCAGAATGTGGTTCAGATCCGGCTTCTGTCGGGGAGCTTCACAAATGGAGCAGCGCATAGAGCCGCTGGAGTTGAGGAACGTGCAGCGCCCGCAGGACCAATCAGAATTCCTCACAACTGCTTCCATCGAACCAGGCTGCTGGTGCTGCTGCTGTTGGCGGGTGATGAAAGTGGTTCCCCACACCGGACTGCTGTGACTGGTCCTCAGCCAACCCATCGGTGCAGCTGCGGGGAACGGAGCCGTTCCGAAGCCGTGATCTGATTCCCTATCCGTGGTCAAAGACGACGCAGAGCTCCCCATTGCCACAACAACTCTTAAACACACACGCCAAGTCCCTCTGTTTGTCTTTCATACGCATAAATACACAAAGGTCAAAGGTGAAACTCAGTTCGGTGGATCACACATCTCCTCCAGTCTGCCAGAGATCAACATCAGGATGTGTTTTACACTGACACTTTCATGCTATGAAGTTCACAGGATTCACGGCTGGCGGCTCCCAAAGGTCTGCAGGAGCCACGGGCCCTCAGTCTCCCGGCGACTGTGATTAACCTGCCGTAACCTCGCCGGAGAGGAAGGACGACGCTTCAGGTATAGTGCAACACATCATTGAAGCGCTTGAAACTTAAACACTTGGTTCACGGGTTTAAAAGAAGAACTTTGACGCAGGAACAAAAGTTTCCAGTCTCCATCGGAGCGTCTTGTTTTTCTGTGAGTCACGGCGCAGTCCCTCTAATCATGTTCTGTGCCcgtctcgctctctctctctttctgtctgtggCTCATCTTTCCGCAGCTGTCACCGGGATTACGATGCGTCACATTTCATCCAGCCTGCAGAAGCAAATATTCCTTTCATCGCAAACAAACATCAGTGGCCTGAGAACAAGCATAGGAGTGTGTGTGCATCAACGCATGCAAGAGTGTGCGCGCGCGTTTAATCCCATATGCATGCAGACACAGgcaattttaaaaacaatgtgcATAATACATCCTGACTTAAACAGATGCACTAGTTAAAACATAACCAGAAGGCCAAATTTTTAAAGGTGATACCAATAATTGGTGTTATTTCATGGCTGATATAGTTACCCTATAAAGTTAAGCATgctttaaaaattacaattatttaacatAAATGTTGGACAACATTATAAAAACAGCCATTTTTAGTTATCCAATGATcctggtaatatttaaaaaaacttaaaaacactggttatattgtaaaaatatatatgtttatatataaatcagtAAGTATTGGCAGATATCGTGCATGCCTCTCTTATAGTCGAGATTCTATAACCAGCCAGTATTTAAACTAAAAGTAGCAGACACAACGAAGCAAACCTGTGAACTGCACACATCTGTGTGACTGTACACGCATGCAAGCCTGTGTGTTTTGAAAAGCAGCCGTGTATCGGTGTCAGTGTGTGTACGGGCGTGCATACGGTGGGCTCAGATGACCAGCGGGTTTCTCTGAGCCTGTGACCCGGCGGAGGCCCTCAGCGGGTCAGGCTGCAGCTGCTGCAGTGAAGCTCGTCCTGCTTTCACAGATCCAGCGGCTCATCTCATGCAGATGTTTACACCGAGTCAGCGGTGGCTTTAAAGGCTCTCGTTTGTCTCTTCGGCCACCGGAGTATCAAGTTTGACACTCAAATCGTGACTATGAATATTTAACGGCGCAGAGAGGCTCGGGTGAGGTGCAGTGGTCTCGGGCCCGGTGAGGACATGAGCGCTCCGGTTCCGCCGGTTCTCCGGTCCGACGTGGAGTCTCTTCAACTGCGGTCCTGCAGCGAAAGCATCCGGGTGAAAGATACTGACAAATCCCTGCGGTAGAAAAGCTCCCGTGCGGATGTGCGGTTCAGTCCGTGGCGGTTCTGTAAACCAGTTCGGACACTCATGATTCTGCTGGAGCCGATGATGATGGTGAGGATGATGATGCTGCTGCCGCGCgccgcataaacacacacacacagcaggcaAACTGCAGCGGTGCTTTCATGCATCTGCTCGCGGGACTCATGATGACAGCATGCGAGTGTTTAAAGCGCAGTTTTGGATGTGCATGCGTGTCTGTGCTGCGGCGATTTATTTGATTCCGTTCTTAATTCAGCCTGTTTCTCTTCAGCACGCGCAGTTGCGCGAGGATTACGACGAGTCAGCAGCGCGCATGCGCAGATTCGATGCTGCTCAGCCTCTGCTAAAGGATCC
>TCONS_00047266
GTCGTTTTTACTCACTTGATGCAGCGTTTAAGTGCTTTAGGATCTGCAAAGTCAGATGGTAGTTTGGAGCATCTGGCACAGAATTTAAAGGTTTCTTCTAGTTTTTGAAACATTTCTTTGTGAGAGCGAAATCCCACCTTGCCTTTGCCTTCCAGCGCTTCcctgaaaaaaagagaaatattgaCAACCTGTCAATGCTGCACACTCATTTGACCCAACAgaatgtgtgtaagtgtgtgtgtgtgtgtgtgtgtttctcacctGTATTCTTTGTAGTCCTTCATGTTCAGTTTGTCTAAGATGACTTTGGAAAGGCCAGGAACTTTATAGTCCATAGTATAAAAACCGAACTGATCTGAGTAAACGCTGTCCGCACTGGGATTAAAAGAGCCTGGTAGAGCTGGAACTGGACCGGCCATTCTAAATGATcgtgtgtcaAAGCGGCCGTGGTCTGTGCAGTCCGTCAGTGTCTGGAGTGAGCTGGGGCGAGTGTGTGGCTTTACTGGATGTCCAGTCGCCCAAAGACGCCTGTGCTGCTTTCCTGTGAGCCAGTCTGTGTGTGATGGAGAAACCGGCGTTTCCCTCCAGCTGAGACAGAACCACCAGAACCTGCCTGCAACACATGAAGGAGGAGGAACGCTGTCGATGGTCTTCAGGCTGCCGCGTGTCGACACCACATTAAAACTGTCTGTACAGTCACAGGACACATGGAGGTAGTACTTTGGGTGACGATTCTCCACCACAACGATAAGCCCCGCCCACCCGTGGGTCAGCAGGATGATGGCGTCTGCGAGTGTGGTGGACGTGGCCTCCACCTGCTCCACCATCACCTGTCTGGAGCTGTAGATGGCCAAAATGTACCCTGGGAAATCCTGACTGGGTCTGCGAGCATTGGTGTTGAGGCTCCGCTGAGGTCCATCTGCCAGTGGTTGAAGGCACAGCAAACCACGGCGTACTCGCCCGGCTCCAGCATCACATCGCAGCCTACAAACTTCTTGACCGCACGCTTGCTGTGTGCCAGCAGACGACCCAGAACCAGCTTATTCCCGTTACTGAACGAGGCCCGGAAGACCATGATGCAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047265 False 5032 lncRNA 0.53 9 39032176 39091863
TCONS_00047266 True 1082 lncRNA 0.51 5 39075456 39091863

Neighbor

gene id symbol gene type direction distance location
XLOC_023684 NA coding downstream 98973 38917646 ~ 38933203 (-)
XLOC_023683 nog2 coding downstream 215451 38814734 ~ 38816725 (-)
XLOC_023682 ntn2 coding downstream 244569 38726737 ~ 38787607 (-)
XLOC_023681 NA coding downstream 360843 38665078 ~ 38671333 (-)
XLOC_023680 si:ch1073-164k15.3 coding downstream 374493 38648885 ~ 38657683 (-)
XLOC_023686 CU929145.1 coding upstream 28862 39120725 ~ 39121900 (-)
XLOC_023687 NA coding upstream 58759 39150622 ~ 39155087 (-)
XLOC_023688 nubp2 coding upstream 86485 39178348 ~ 39186185 (-)
XLOC_023689 NA coding upstream 132849 39224712 ~ 39226058 (-)
XLOC_023690 kcnj12a coding upstream 261530 39353393 ~ 39354829 (-)
XLOC_023665 dre-mir-735 misc downstream 854149 38177961 ~ 38178027 (-)
XLOC_023678 NA non-coding downstream 422430 38602017 ~ 38609746 (-)
XLOC_023676 NA non-coding downstream 484139 38536419 ~ 38548037 (-)
XLOC_023675 FP102794.1 non-coding downstream 507557 38523993 ~ 38524619 (-)
XLOC_023698 CT573356.1 non-coding upstream 634983 39726846 ~ 39726978 (-)
XLOC_023708 NA non-coding upstream 1719668 40811531 ~ 40814280 (-)
XLOC_023711 NA non-coding upstream 1782078 40873941 ~ 40875493 (-)

Expression


Co-expression Network