G455946


Basic Information

Item Value
gene id G455946
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91768543 ~ 91768852 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU516236
tccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggttgaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtattgtgagattttgagtgaaaacctccttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU516236 True 310 lncRNA 0.44 1 91768543 91768852

Neighbor

gene id symbol gene type direction distance location
dda1 LOC106560571 coding upstream 86786 91678060 ~ 91681757 (+)
ptprc ptprc coding upstream 108326 91633185 ~ 91660217 (+)
LOC110524798 NA coding upstream 151628 91581971 ~ 91616915 (+)
LOC110524795 LOC106560563 coding upstream 206958 91338847 ~ 91561585 (+)
LOC118964734 NA coding upstream 482978 91284238 ~ 91285565 (+)
gtpbp3 gtpbp3 coding downstream 13689 91782541 ~ 91813624 (+)
ushbp1 ushbp1 coding downstream 80985 91849837 ~ 91873254 (+)
nr2f6b LOC106560576 coding downstream 127689 91896541 ~ 91919412 (+)
LOC110523039 LOC106560602 coding downstream 170806 91939658 ~ 91950975 (+)
LOC118964689 LOC106560602 coding downstream 219015 91987867 ~ 92000859 (+)
G455942 NA non-coding upstream 9064 91759249 ~ 91759479 (+)
G455941 NA non-coding upstream 9521 91758808 ~ 91759022 (+)
G455894 NA non-coding upstream 29945 91641579 ~ 91738598 (+)
G455495 NA non-coding upstream 237331 91530965 ~ 91531212 (+)
G455949 NA non-coding downstream 3203 91772055 ~ 91772393 (+)
G456070 NA non-coding downstream 10811 91779663 ~ 91779939 (+)
G456107 NA non-coding downstream 108740 91877592 ~ 91878640 (+)
G456130 NA non-coding downstream 119668 91888520 ~ 91889982 (+)
G456143 NA non-coding downstream 203681 91972533 ~ 91981285 (+)
G455469 NA other upstream 278553 91487745 ~ 91489990 (+)
G455211 NA other upstream 705922 91061090 ~ 91062621 (+)
G455203 LOC106560548 other upstream 774244 90993865 ~ 90994299 (+)
G455168 NA other upstream 978332 90788518 ~ 90790211 (+)
G456139 LOC106560602 other downstream 174302 91943154 ~ 92000758 (+)
G456731 cp other downstream 1233151 93002003 ~ 93041462 (+)
LOC110524836 rpl36 other downstream 1453054 93221830 ~ 93225091 (+)
G456927 NA other downstream 1579942 93348794 ~ 93349619 (+)
LOC110524846 LOC106560502 other downstream 1965992 93722660 ~ 93780941 (+)

Expression


Co-expression Network