G456070



Basic Information


Item Value
gene id G456070
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91779663 ~ 91779939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU516399
agatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcccaaggcactgtatatacataatgtgacatttgaaatgtctt

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU516399 True 277 lncRNA 0.35 1 91779663 91779939

Neighbor


gene id symbol gene type direction distance location
dda1 LOC106560571 coding upstream 97906 91678060 ~ 91681757 (+)
ptprc ptprc coding upstream 119446 91633185 ~ 91660217 (+)
LOC110524798 NA coding upstream 162748 91581971 ~ 91616915 (+)
LOC110524795 LOC106560563 coding upstream 218078 91338847 ~ 91561585 (+)
LOC118964734 NA coding upstream 494098 91284238 ~ 91285565 (+)
gtpbp3 gtpbp3 coding downstream 2602 91782541 ~ 91813624 (+)
ushbp1 ushbp1 coding downstream 69898 91849837 ~ 91873254 (+)
nr2f6b LOC106560576 coding downstream 116602 91896541 ~ 91919412 (+)
LOC110523039 LOC106560602 coding downstream 159719 91939658 ~ 91950975 (+)
LOC118964689 LOC106560602 coding downstream 207928 91987867 ~ 92000859 (+)
G455949 NA non-coding upstream 7270 91772055 ~ 91772393 (+)
G455946 NA non-coding upstream 10811 91768543 ~ 91768852 (+)
G455942 NA non-coding upstream 20184 91759249 ~ 91759479 (+)
G455941 NA non-coding upstream 20641 91758808 ~ 91759022 (+)
G455894 NA non-coding upstream 41065 91641579 ~ 91738598 (+)
G456107 NA non-coding downstream 97653 91877592 ~ 91878640 (+)
G456130 NA non-coding downstream 108581 91888520 ~ 91889982 (+)
G456143 NA non-coding downstream 192594 91972533 ~ 91981285 (+)
G456140 NA non-coding downstream 193612 91973551 ~ 91978757 (+)
G456168 NA non-coding downstream 195473 91975412 ~ 91977974 (+)
G455469 NA other upstream 289673 91487745 ~ 91489990 (+)
G455211 NA other upstream 717042 91061090 ~ 91062621 (+)
G455203 LOC106560548 other upstream 785364 90993865 ~ 90994299 (+)
G455168 NA other upstream 989452 90788518 ~ 90790211 (+)
G456139 LOC106560602 other downstream 163215 91943154 ~ 92000758 (+)
G456731 cp other downstream 1222064 93002003 ~ 93041462 (+)
LOC110524836 rpl36 other downstream 1441967 93221830 ~ 93225091 (+)
G456927 NA other downstream 1568855 93348794 ~ 93349619 (+)
LOC110524846 LOC106560502 other downstream 1954905 93722660 ~ 93780941 (+)

Expression



Co-expression Network