G456107


Basic Information

Item Value
gene id G456107
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91877592 ~ 91878640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU516446
AGATGTCTTAGACCCGTTAGCCAGGGCCTCTGTCTGCCTGGCCTCAGCTAACCCGCTCTCCACCGTCTTGCCTTCTGCTCCATCCGTCCACAGTAACTAGCTGAACAACAGATTTAACAGGAGACAGGAAATGGAGATGGACGCCGATGTCCAAACTGTTGTGACTGCCTCAGTGTGttacagtcttgtctcatcgctgcaactcccgtacagactctggagaggcgaaggtcgagagccatgtgtcctctcacaacccagccaagctgcactgcttcttgacacaacgcccacttaacctggaggccaaccgcaccaatgtgtcggaggaaacgccgtacacctggcaaccgtgtcagtgtgcactgagcccggcccgccacaggagtcgctagtgcgcgatgggacaagaacatccctgccggccaaaccctcccctaacccgggcgacgctgggacaattgtgcgccgacacatgggtctcccggtcatggccgggGGGTGGATGATGTTCTGAGGCAGGTTCCACTGCCCTGtttagaggaagagggaggaggttcTACAGAGGTCAAAGGCTctgtggagaggagagcaggaaaggagagaaggagaggcgatCAGAAAAGAGAAAAATAGAAATAGATAATGATGGAGTACAGaattagagaagagagagagaagagagagagagaaggagagagacagagagaaggagagggagagaaggaga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU516446 True 730 lncRNA 0.55 2 91877592 91878640

Neighbor

gene id symbol gene type direction distance location
ushbp1 ushbp1 coding upstream 4338 91849837 ~ 91873254 (+)
gtpbp3 gtpbp3 coding upstream 63968 91782541 ~ 91813624 (+)
dda1 LOC106560571 coding upstream 195835 91678060 ~ 91681757 (+)
ptprc ptprc coding upstream 217375 91633185 ~ 91660217 (+)
LOC110524798 NA coding upstream 260677 91581971 ~ 91616915 (+)
nr2f6b LOC106560576 coding downstream 17901 91896541 ~ 91919412 (+)
LOC110523039 LOC106560602 coding downstream 61018 91939658 ~ 91950975 (+)
LOC118964689 LOC106560602 coding downstream 109227 91987867 ~ 92000859 (+)
pde6d pde6d coding downstream 177862 92056502 ~ 92079881 (+)
trnaa-ugc-15 NA coding downstream 189206 92067846 ~ 92067919 (+)
G456070 NA non-coding upstream 97653 91779663 ~ 91779939 (+)
G455949 NA non-coding upstream 105199 91772055 ~ 91772393 (+)
G455946 NA non-coding upstream 108740 91768543 ~ 91768852 (+)
G455942 NA non-coding upstream 118113 91759249 ~ 91759479 (+)
G455941 NA non-coding upstream 118570 91758808 ~ 91759022 (+)
G456130 NA non-coding downstream 9880 91888520 ~ 91889982 (+)
G456143 NA non-coding downstream 93893 91972533 ~ 91981285 (+)
G456140 NA non-coding downstream 94911 91973551 ~ 91978757 (+)
G456168 NA non-coding downstream 96772 91975412 ~ 91977974 (+)
G456139 LOC106560602 non-coding downstream 110584 91943154 ~ 92000758 (+)
G455469 NA other upstream 387602 91487745 ~ 91489990 (+)
G455211 NA other upstream 814971 91061090 ~ 91062621 (+)
G455203 LOC106560548 other upstream 883293 90993865 ~ 90994299 (+)
G455168 NA other upstream 1087381 90788518 ~ 90790211 (+)
G456731 cp other downstream 1123363 93002003 ~ 93041462 (+)
LOC110524836 rpl36 other downstream 1343266 93221830 ~ 93225091 (+)
G456927 NA other downstream 1470154 93348794 ~ 93349619 (+)
LOC110524846 LOC106560502 other downstream 1856204 93722660 ~ 93780941 (+)

Expression


Co-expression Network