G456139 (LOC106560602)


Basic Information

Item Value
gene id G456139
gene name LOC106560602
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 91943154 ~ 92000758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU516494
AAAAGAACTAGGCCTTAGCCTACTACTCTTGACAACAAGATGTAATCTCAGGGTGAGGTTTTCTTCACTACGCACAATCAACAGTGAGACATTCACATCTAAACCAGGAGTCCAACCACAACACAACCCACAGTGAAACATTCACATCTAAACCAGGAGTCCGACCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGGTCAATACAAACACTGGGCTCTGGACATTGGACATGGAAAGGTCATCCATTTGGTAGTTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516495
AAAAGAACTAGGCCTTAGCCTACTACTCTTGACAACAAGATGTAATCTCAGGGTGAGGTTTTCTTCACTACGCACAATCAACAGTGAGACATTCACATCTAAACCAGGAGTCCAACCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGTTCAATACAAACACTGGGCTCTGTACATTGGACATGGAAAGGTCATCCAGTTGGTAACTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516491
tggtgACATGATTGAGATAAACAGAGGTGCATTCAAACACTGGGCTCTGTACATTGGACATGGAAAGGTCATCCAGTTGATAACTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516493
tggtgACATGATTGAGATAAACAGAGGTGCATTCAAACACTGGGCTCTGTACATTGGACATGGAAAGGTCATCCATTTGGTAGTTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516486
GCAGGATGTTGGTTGTGGACCTTGTGATCTAAGGGAAACTTTTTTTTCATTAGACACAACCCACAGTGAAACATTCACATCTAAACCAGGAGTCCGACCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGTTCAATACAAACACTGGGCTCTGTACATTGGACATGGAAAGGTCATCCAGTTGGTAACTCCAGATGGACCTTCAAAAGTAGCTTTCTGCAGTTTTAGCCCATCCAGCGGCAGTGTTGCCTGTAAAGGCATGATTACAACCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATAACAAGTACAAACCAAGGAGGACTGACGTCATTATGGGGGATGTGGGCATCCTGAAAGGCCACAGAATATCATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTACGGCCAATCAGAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516492
GCAGGATGTTGGTTGTGGACCTTGTGATCTAAGGGAAACTTTTTTTTCATTAGACACAACCCACAGTGAAACATTCACATCTAAACCAGGAGTCCGACCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGTTCAATACAAACACTGGGCTCTGTACATTGGACATGGAAAGGTCATCCAGTTGGTAACTCCAGATGGACCTTCAAAAGTAGCTTTCTGCAGTTTTAGCCCATCCAGCGGCAGTGTTGCCTGTAAAGGCATGATTACAACCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGGCGTCATTATGGGGGATGTGAACTAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCAGATGACTTCCTGAAGGATTTGTTAGCTGGTACTGCAGGCCTGCTTGGTGTACTGACTGCTGTTACGACTTCTACAGCTGCTGCAGCAAGCACACTTAGTAAATAAATTCTTGGGTCATTCATGAGTCCATGGAGAATGTCAGTAATGCAAAATGTTGTGTATTGCCTAATGAATAAAGGACCATCTCAAAGACCAATGTGGTTGTGTGGTCATTTTTCATTCAAATCAAACAGAAT
>TU516497
GCAGGATGTTGGTTGTGGACCTTGTGATCTAAGGGAAACTTTTTTTTCATTAGACACAACCCACAGTGAAACATTCACATCTAAACCAGGAGTCCGACCACAACACAACCCACAGTGAAACATTCACATATAAACCAGGAGTCCGATCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGGTCAATACAAACACTGGGCTCTGGACATTGGACATGGAAAGGTCATCCATTTGGTAGTTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516499
cctaacaCCACAGTAAAACTGACAATTACACTtacatgtgtgtgtacacacacacacacacacacacacgcacacacacacacacacgcacacacacacacacacacacacgcacgcacacacacacacacacacacactcacacctttTTATTTCTTCCCATTTTGTAGATGGACCTTCAAAAGTAGCTTTCTGCAGTTTTAGCCCATCCAGCGGCAGTGTTGCCTGTAAAGGCATGATTACAACCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGGCGTCATTATGGGGGATGTGAACTAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTACGGCCAATCAGAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT
>TU516489
GCAGGATGTTGGTTGTGGACCTTGTAATCTAAGGGAAACTTTTTTTTCATTAGACACAACCCACAGTGAAACATTCACATATAAACCAGGAGTCCGATCACAATGGAGATTGGTGACATGATTGAGATCAACAGAGGTCAATACAAACACTGGGCTCTGGACATTGGACATGGAAAGGTCATCCATTTGGTAGTTCCAGATGGACCTTCAAGAGTATCTTTCTGCAGTGTTAGCTCATTCAGCGGCAGTGTTGCCTGTAAAGGCACGGTTACAATCGAGACATTACAGGATGTGGCAGCAGGGAATACTTACAAAATCAACAACTACCTGGATGACGAGTACAAACCAAGGCCGACTGACGTCATTATGGGGGATGTGGACAAATTGAGAGGCAGCACAATAAAATATGACCTCCTTGGAAACAACTGCGAGCATTTTGTTACTTTCCTCCGTTATGGCAAATCAAAGTCCAAACAGGCCGATGACTTCCTGAAGGATTTGTTAACTGGTACTGCAGGCCTGCTTGGTGTACTGGCTGCTTTTACTGCTTCTACAACTGCTGCAGCAAGCACACT

Function

NR:

description
Retinoic acid receptor responder protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU516494 False 642 TUCP 0.45 5 91943154 92000758
TU516495 False 593 TUCP 0.45 4 91943154 92000758
TU516491 False 465 TUCP 0.46 3 91944120 92000758
TU516493 False 465 TUCP 0.46 4 91944120 92000758
TU516486 False 575 TUCP 0.46 5 91987909 92000758
TU516492 False 666 TUCP 0.43 4 91987909 91990010
TU516497 False 624 TUCP 0.45 5 91987909 92000758
TU516499 False 546 lncRNA 0.47 3 91989224 92000758
TU516489 True 575 TUCP 0.45 4 91997596 92000758

Neighbor

gene id symbol gene type direction distance location
LOC110523039 LOC106560602 coding upstream 38249 91939658 ~ 91950975 (+)
nr2f6b LOC106560576 coding upstream 69812 91896541 ~ 91919412 (+)
ushbp1 ushbp1 coding upstream 115970 91849837 ~ 91873254 (+)
gtpbp3 gtpbp3 coding upstream 175600 91782541 ~ 91813624 (+)
dda1 LOC106560571 coding upstream 307467 91678060 ~ 91681757 (+)
pde6d pde6d coding downstream 55744 92056502 ~ 92079881 (+)
trnaa-ugc-15 NA coding downstream 67088 92067846 ~ 92067919 (+)
phb2b LOC106560578 coding downstream 79303 92080061 ~ 92089429 (+)
LOC110524814 LOC106560581 coding downstream 239908 92240666 ~ 92245192 (+)
LOC110524815 dlg1 coding downstream 300047 92300805 ~ 92598233 (+)
G456143 NA non-coding upstream 7939 91972533 ~ 91981285 (+)
G456140 NA non-coding upstream 10467 91973551 ~ 91978757 (+)
G456168 NA non-coding upstream 11250 91975412 ~ 91977974 (+)
G456130 NA non-coding upstream 99242 91888520 ~ 91889982 (+)
G456107 NA non-coding upstream 110584 91877592 ~ 91878640 (+)
G456179 NA non-coding downstream 4544 92005302 ~ 92008124 (+)
G456207 NA non-coding downstream 44710 92045468 ~ 92045833 (+)
G456226 NA non-coding downstream 91566 92092324 ~ 92092537 (+)
G456227 NA non-coding downstream 93563 92094321 ~ 92108035 (+)
G456419 NA non-coding downstream 108180 92108938 ~ 92109662 (+)
G455469 NA other upstream 499234 91487745 ~ 91489990 (+)
G455211 NA other upstream 926603 91061090 ~ 91062621 (+)
G455203 LOC106560548 other upstream 994925 90993865 ~ 90994299 (+)
G455168 NA other upstream 1199013 90788518 ~ 90790211 (+)
G456731 cp other downstream 1001245 93002003 ~ 93041462 (+)
LOC110524836 rpl36 other downstream 1221148 93221830 ~ 93225091 (+)
G456927 NA other downstream 1348036 93348794 ~ 93349619 (+)
LOC110524846 LOC106560502 other downstream 1734086 93722660 ~ 93780941 (+)
G458015 NA other downstream 2135160 94135918 ~ 94136269 (+)
ptprc ptprc coding upstream 282937 91633185 ~ 91660217 (+)
G456070 NA non-coding upstream 163215 91779663 ~ 91779939 (+)
G455949 NA non-coding upstream 170761 91772055 ~ 91772393 (+)
G455946 NA non-coding upstream 174302 91768543 ~ 91768852 (+)

Expression


Co-expression Network