XLOC_023689


Basic Information

Item Value
gene id XLOC_023689
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 39224712 ~ 39226058 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047269
TCTTGGTAGcataaaacaatttttatttttttacaaaaaaatgtacaaaatgcaCATTAATCAATCATTTTATAAGCAACCATTAATACACGTACAAAGGCAACATAATCATTTCATGCATCCTGAATGTAACacgattaaaaaaacacaaaatgtagTAAATTTACAGATAAAACCCTTTGATTTCCTCATATTAGTATGACAATAAAATTCCTCCGGACTCATAAGACACAAAAATACTTCCTGAAGTTTGTTTGAGGACATACAGCAGGTAACCTTTGACAATCCTCCCATGTTTACATCTTCCACAGTATTAAAAAGAGATGATTATTGATCATCTGCCACTTTTAAAAGTATAAACTAGTGAAGAATAGAGTTTCATCACTGGCCTCAGCTCAAGGTATACCTGAATTAATTTTAAGCATTAATACTGAATACTGTATGACATGCTTGTGTTTTCCCTGGTGGTAAAGTCTAATGTCCCAGAATAAGCATGAGACGGGGTCTTCTCTATGTCCTGTTGATGGAGGGATTGTTTTCCTCATGTTCCTCTTCATTCATCAGTGGTTCTCTGTCCATCAGAGCCGGAGTGGTTTCAGCCGTTGATCTCTTAGTGGTCTTATTGAGAGTGCTTCCCTGGCTGGAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005732 small nucleolar ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047269 True 646 lncRNA 0.36 2 39224712 39226058

Neighbor

gene id symbol gene type direction distance location
XLOC_023688 nubp2 coding downstream 38527 39178348 ~ 39186185 (-)
XLOC_023687 NA coding downstream 69625 39150622 ~ 39155087 (-)
XLOC_023686 CU929145.1 coding downstream 102812 39120725 ~ 39121900 (-)
XLOC_023685 NA coding downstream 132849 39032176 ~ 39091863 (-)
XLOC_023684 NA coding downstream 291509 38917646 ~ 38933203 (-)
XLOC_023690 kcnj12a coding upstream 127335 39353393 ~ 39354829 (-)
XLOC_023691 lyrm1 coding upstream 283663 39509721 ~ 39518630 (-)
XLOC_023692 cox6b1 coding upstream 379995 39606053 ~ 39610585 (-)
XLOC_023693 fam234a coding upstream 394403 39620461 ~ 39637418 (-)
XLOC_023694 CT573356.4 coding upstream 457210 39683268 ~ 39683582 (-)
XLOC_023665 dre-mir-735 misc downstream 1046685 38177961 ~ 38178027 (-)
XLOC_023681 NA non-coding downstream 553379 38665078 ~ 38671333 (-)
XLOC_023678 NA non-coding downstream 614966 38602017 ~ 38609746 (-)
XLOC_023698 CT573356.1 non-coding upstream 500788 39726846 ~ 39726978 (-)
XLOC_023708 NA non-coding upstream 1585473 40811531 ~ 40814280 (-)
XLOC_023711 NA non-coding upstream 1647883 40873941 ~ 40875493 (-)
XLOC_023713 NA non-coding upstream 1682467 40908525 ~ 40910541 (-)
XLOC_023714 NA non-coding upstream 1907207 41133265 ~ 41152077 (-)

Expression


Co-expression Network