G457493


Basic Information

Item Value
gene id G457493
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 92816545 ~ 92908138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU518182
GTAATGATGCAACCGACCACTTGGTGGAGCCAGAGACACGTTTAACAGAGAAGCCTCTATTCTAGAACTACCTAGTTTGTTGTCTGACAAAATGGTGAGAAATTAATAAAATAAGGAATGCAAGCATATTATCAGGCACTGTAAGCGTCATTGGTTTAAACACCAAAActatgtttcaagtgagaatttgACAGGTCTGAAaacccaaaataaaataaatgattgcCCAATTCacccatattttatttttgcaaaaaaagtagtgtgtagttccacaGCTGCATGGCAACAAAAAGTAACTAACTACTGACAAAAAATGACCAAGGTTTaaatttagttcaactaccaccaagctactgcaaagtCATGTACAACTACATGTatttcactactccccaacactgatatgtctttcagttgttaaataaAGACGTTTTTTTCAGAGGTTCTTTATCTTGCTATGATGAAAGTGGATCCATCCATCGAAAACAAGAGGATTAACTGATATGTAACTATCTGGATAATTGCTTTGCATGCATCAACTCGATTGATTATAGAGACACGGGAGTGGCTTAACTTCTCCATGTCATGTTAGCATAGTGCTTACCCCCACGAACAAGGCCGTGTGCCGTGTGTCATTGTACTGAGCCGTTACATTGACCCACAGTGGTTCAGCTAACTATGACCTTAATGGACTTAGTATAACAgcttcttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU518182 True 846 lncRNA 0.40 3 92816545 92908138

Neighbor

gene id symbol gene type direction distance location
senp5 senp5 coding downstream 173508 92636855 ~ 92643037 (-)
LOC110524822 NA coding downstream 185651 92629338 ~ 92630894 (-)
si:ch73-61d6.3 LOC106560577 coding downstream 771523 92005240 ~ 92045022 (-)
LOC110524808 LOC106560602 coding downstream 835949 91973511 ~ 91980596 (-)
babam1 babam1 coding downstream 967402 91832381 ~ 91849143 (-)
cp cp coding upstream 93933 93002071 ~ 93041479 (-)
tm4sf18 LOC106560593 coding upstream 136760 93044898 ~ 93062301 (-)
LOC110522899 NA coding upstream 165232 93073370 ~ 93078003 (-)
wwtr1 LOC106560594 coding upstream 192113 93100251 ~ 93164513 (-)
commd2 commd2 coding upstream 262696 93170834 ~ 93178507 (-)
G457484 NA non-coding downstream 13056 92784508 ~ 92803489 (-)
G457489 NA non-coding downstream 14390 92796306 ~ 92802155 (-)
G457486 NA non-coding downstream 28482 92783027 ~ 92788063 (-)
G457477 NA non-coding downstream 55606 92754054 ~ 92760939 (-)
G457479 NA non-coding downstream 56557 92758991 ~ 92759988 (-)
G457523 NA non-coding upstream 996 92909134 ~ 92910234 (-)
G457538 NA non-coding upstream 43690 92951828 ~ 92957705 (-)
G457606 NA non-coding upstream 158937 93067075 ~ 93067276 (-)
G457608 NA non-coding upstream 163545 93071683 ~ 93071938 (-)
G457617 NA non-coding upstream 175604 93083742 ~ 93083943 (-)
G457423 NA other downstream 241791 92574263 ~ 92574754 (-)
G457422 NA other downstream 242651 92571979 ~ 92573894 (-)
G457385 NA other downstream 302161 92511919 ~ 92514384 (-)
G456288 LOC106560576 other downstream 901757 91896636 ~ 91914788 (-)
G457491 LOC106560589 other upstream 17558 92881393 ~ 92931639 (-)
G457534 NA other upstream 32368 92940506 ~ 92943525 (-)
G457537 NA other upstream 42540 92950678 ~ 92966992 (-)
G457595 NA other upstream 110256 93018394 ~ 93020280 (-)
G457740 NA other upstream 533762 93441900 ~ 93442413 (-)

Expression


Co-expression Network