XLOC_023703 (smyhc2)


Basic Information

Item Value
gene id XLOC_023703
gene name smyhc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 40680153 ~ 40700596 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046753
AAGCTCACATCATTGTACCACCTAAAGGACTTGGATTTCATCTGGCGAGGCACACTTTCATCTGATTGACTGAAAGATGGGGGATGCTGTGATGGCAGAGTTTGGGCCTGCGGCTCCGTTCTTACGTAAATCAGATAAGGAGCGTCTGGAGGCCCAAACTCGTCCTTTTGACATGAAGAAGGAGTGTTTCGTGCCTGATCCCGAGGTTGAGTATGTCAAAGCCTCCGTCACCAGTAGAGACGGTGATAAAGTCACTGTTGAGACTGAATTTGGGAAGACCGTCACTGTGAAGGAGGTTGACTGTCACCCTCAGAACCCGCCAAAGTTTGATAAGATTGAGGACATGGCGATGTTCACCTTCCTGCACGAGCCTGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTACACCTACTCTGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTACAATCAGGAGGTGGTCGTTGCCTACAGAGGAAAGAAGAGGACTGAAGCTCCTCCTCACATCTTCTCCATCTCTGACAACGCCTACCAGTACATGCTGTCAGACAGAGAAAACCAGTCTGTCCTGATCACTGGAGAATCCGGTGCTGGAAAGACTGTGAACACTAAAAGAGTAATCCAGTACTTTGCCAGCATTGCAGCAGCACCAGGCGGCAAAAAGGATCCATCACAGGAGAAAAAGGGTACTCTGGAGGATCAAATCATCCAGTGTAATCCTGCTCTGGAGGCTTTTGGTAATGCCAAGACCATCAGGAATGACAACTCCTCGCGATTTGGTAAATTTATTCGGATCCATTTTGGAGTCAGTGGAAAGTTGTCTTCTGCTGACATTGAGACTTATCTGCTGGAAAAGTCTCGTGTCACTTATCAGCTCAAGGCTGAGAGGGACTACCACATCTTCTACCAGATCCTGTCTCAGAGGAAACCAGAACTGCTGGAGATGCTGCTCATCACCAATAACCCCTATGACTACTCCTATATCTCCCAAGGAGAGACACAAGTGGCATCTATTGATGACAGGGATGAGCTGATTGCCACTGATGAAGCGTTTGATGTGCTGGGCTTCACCCAAGAGGAGAAGAACAGCATCTACAAGCTGACTGGTGCCATCATGCACTACGGCAACATGAAGTTCAAGCAGAAGCAGAGAGAGGAACAGGCCGAGGCTGATGGCACTGAGGATGCTGACAAAGTCGCTTATCTGATGGGCCTGAACTCTGCTGACCTCATCAAGGGTTTGTGCCATCCAAGAGTCAAAGTAGGAAATGAGTGGGTCACCAAAGGACAGAATGTCCAACAGGTGTATTACTCGATTGGTGCTCTGGCTAAGTCAGTGTATGAGAAGATGTTCCTCTGGATGGTGGTGAGAATCAACCAATCCCtggacaccaaacagcctcgccAGTACTTCATTGGTGTGCTGGACATTGCTGGCTTTGAGATCTTTGATTTCAACACCTTTGAGCAGCTGTGCATCAACTTTACTAATGAGAAGTTGCAGCAGTTCTTCAACCACCACATGTTTGTGCTGGAGCAAGAGGAATACAAGAAGGAAGGGATCGAGTGGGAGTTTATTGACTTCGGCATGGACTTACAGGCTTGTATTGAGCTTATTGAGAAGCCCATGGGTATCATGTCTATCCTAGAAGAGGAGTGCATGTTCCCCAAAGCCAGTGATGCAACATTTAAAGCTAAGCTTTATGACAACCATCTGGGCAAAAACCCTAACTTCCAGAAGCCCAGGATTGTCAAGGGTAGACCAGAGGCCCATTTCGCCCTGGTCCACTACGCTGGCACTGTTGACTACAATATTTCAAACTGGCTGGTGAAGAACAAGGATCCTCTGAATGAGACGGTTGTAGGGTTGTTCCAGAAATCAACTCTTAAACTGTTGGGTACTCTGTTTGCTAATTACGCTGGTGCCGAGTCAGCTGATTCTGGAGGTAAAGGCAAAGGAGGTGCCAAAAAAAAGGGTTCTTCCTTCCAGACAGTATCAGCTCTTCATAGGGAGAACCTGAATAAGCTGATGACCAACCTGAGGTCAACTCACCCTCACTTTGTGCGTTGCCTGATCCCCAATGAGACTAAGACTCCTGGGGCGATGGAGAATCCTCTGGTCATGCACCAGCTGCGCTGTAACGGTGTGCTGGAGGGCATCAGAATCTGCAGAAAGGGCTTCCCCAACAGGATCCTGTATGGAGATTTCAAACAACGATACCGCATTCTGAACCCATCAGCTATTCCTGAGGGACAGTTCATTGATAACAAGAAGGGTGCAGAAAAACTTCTGGGCTCACTGGACATTGATCACAACCAGTACAAGTTAGGACACACTAAGGTGTTCTTCAAGGCTGGTCTTCTGGGTACTCTTGAGGAGATGCGAGATGACCGTCTTGCACTTATTATAACTGGAATTCAAGCAAGAGCTCGTGGTATTCTCTCAAGAATTGAATTTCAGAAAATTGTGGAGAGAAGAGATTCATTGCTGGTGATCCAGTGGAATGTGCGTGCCTTCATGGGGGTCAAGAATTGGCCTTGGATGAAGCTGTACTTCAAGATCAAACCACTGCTGAAGACTGCAGAGACTGAGAAAGAGATGGCCAACATGAAGGAGGAATTCACCAAGCTGAAGGAGGCTTATGCCAAATCTGAAGCTCGCAAAAAGGAACTTGAAGAAAAGATGGTTTCTCTTCTCCAAGAGAAGAATGACCTGCAGCTTGCAGTGCAGTCTGAGCAAGATAATCTTGCCGATGCTGAGGAGAGATGTGAGGGTCTGATTAAGAGTAAGATCCAGTTTGAGGCCAAAGTCAAAGAGCTGACGGAGAGGCTGGAGGATGAAGAGGAAATGAATGCAGAATTAGTGGCAAAGAAGAGAAAGCTGGAGGATGAATGTTCTGAACTCAAGAAAGACATTGATGATCTGGAGCTCACTCTGGCCAAAGTGGAGAAGGAGAAACATGCAACTGAGAACAAGGTTAAGAACCTGACAGAAGAGATGGCAGCTTTGGATGAGATTATCGCTAAGCTGACCAAGGAGAAGAAAGCTCTACAGGAGGCCCATCAGCAAACACTGGACGACCTCCAGAGTGAGGAAGACAAAGTCAACACACTCACCAAAGCCAAAGCCAAGCTGGAGCAGCAAGTGGATGATCTTGAAGGTTCTTTGgaacaagaaaagaaaattcgCATGGATCTTGAGAGAGCTAAAAGAAAGCTTGAGGGTGACTTGAAGCTTACTCAGGAGAATTTGATGGATTTGGAAAATGATAAGCAGCAGATGGAAGAGAGGCTAAAAAAAAAAGACTTTGAAATTAGCCAGCTCAATAGCAAAATTGAAGATGAGCAAGCTCTTGAGGCCCAACTCCAGAAGAAACTGAAGGAGCTGCAGGCCCGAATTGAAGAGCTTGAGGAAGAGCTGGAGGCTGAGAGAGCTGCCCGTGCCAAAGTTGAGAAACAGAGAGCCGATCTGTCCAGAGAACTGGAGGAGATCAGCGAGAGGTTGGAGGAGGCTGGTGGAGCCACCGCTGCCCAGATCGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAACTGCGCAGAGACCTTGAAGAGGCCACTCTGCAGCATGAGGCCACAGCTTCTACCCTGAGGAAGAAACATGCCGACAGTGTGTCTGATCTGGGAGAGCAGATCGACAACCTTCAGAGAGTCAAGCAGAAGCTGGAGAAAGAGAAGAGCGAACTCAGACTGGAACTGGACGATGTGGTCTCCAACATGGAGCAGATTGTTAAGGCAAAGGCAAACCTGGAGAAAATGTGCAGAACTCTGGAGGACCAGATGAGTGAGTACAGAACCAAAGCAGAGGAAGGACAGCGCACAATCAACGATTTCACCATGCAAAAAGCCAAGCTGCAAACTGAGAATGGTGAACTGTCCAGACAGCTGGAGGAGAAAGACTCCCTGGTGTCTCAGTTGACCAGAGGAAAGCAGTCCTACACCCAGCAGATTGAAGACCTCAAGAGACAGCTAGAGGAGGAAGTCAAGGCAAAGAATGCACTGGCACATGCAGTTCAGTCTGCTCGTCATGATGCTGAATTGTTGAGGGAGCAATATGAAGAGGAGCAGGAAGCCAAAGCTGAGCTGCAGCGTAGTCTGTCCAAGGCAAACTCTGAAGTGGCTCAGTGGAGAACCAAGTATGAAACTGATGCCATCCAGAGGACTGAGGAGCTGGAGGAGGCCAAGAAGAAGCTGGCTCAGCGTCTGCAAGATGCAGAAGAGGCTGTGGAAGCTGTTAATGCTAAATGCTCCTCTCTGGAGAAGACCAAGCACAGGCTCCAGAATGAGATTGAAGATCTTATGGTGGACGTGGAGAGATccaatgctgctgctgctgctctggACAAGAAGCAAAGAAACTTTGATAAAGTCCTGGCTGAGTGGAAGCAAAAGTATGAGGAGTCCCAAACTGAACTGGAAAGTGCCCAGAAAGAGTCTAGATCTCTGAGCACTGAACTATTTAAGCTGAAGAACTCCTATGAGGAGTCTCTGGATCATTTGGAGAGCATGAAGAGGGAGAACAAGAATCTCCAAGAGGAAATTTCTGATCTCACTGAGCAACTTGGTGAGAGTGGGAAAAACATTCATGAGCTGGAGAAAGTTCGGAAACAACTGGAGCAAGAGAAACAAGAGATACAAACTGCTCTGGAGGAAGCTGAGGGCTCTCTTGAGCACGAGGAAGGCAAGATCCTCAGAGCTCAACTAGAGTTCAATCAGGTCAAAGCTGACATTGAGCGTAAGCTGTCTGAGAAAGATGAAGAGATGGAGCAGGCCAAGAGGAACCAGCAGAGAGTGGTGGATACCCTGCAGAGTTCACTGGAATCAGAGACTCGCAGCAGGAATGAAGCTCTCAGACTGAAGAAGAAGATGGAGGGAGACCTCAATGAGATGGAGATTCAGCTCAGCCAGGCTAACAGGCAGGCATCAGAAGCCCAGAAGCAACTCAAGGGTCTTCATGGACATCTCAAAGATGCCCAATTGCAACTGGATGACGCTCTGCGTGGCAATGATGATCTCAAAGAGAACATCGCCATTGTGGAGAGACGCAACAATCTGCTGCAGGCTGAACTGGATGAGCTGAGATCCCTGGTGGAACAGACTGAGAGAGGAAGGAAACTGGCTGAGCAGGAACTGATGGACGTCAGTGAGAGAGTTCAGCTCCTGCATTCTCAGAACACCAGCCTGCTGAATCAGAAGAAGAAGCTGGAGGGAGATAATACTCAGCTTCAGACTGAGGTTGAGGAGGCAGTGCAGGAGTGCAGGAATGCTGAGGAAAAGGCCAAGAAGGCCATCACTGATGCTGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCTCATCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGCACCGTCTGGATGAAGCTGAGCAGATCGCCATGAAGGGTGGCAAGAAGCAGGTCCAGAAACTGGAATCTAGGGTGAGAGAGCTGGAAAGTGAGGTGGAGATGGAACAGAGAAAGGCAAGCGACTCTGTAAAAGGAGTCCGTAAATACGAGAGGCGCATTAAGGAGCTCACCTACCAGACTGAGGAAGACCGTAAGAATCTGGCTCGTCTTCAAGATCTGGTGGACAAACTGCAGCTGAAGGTCAAGTCCTACAAGAGAACTGCTGAAGAGGCTGAGGAACAGGCCAATTCTAACCTGGGCAAGTTCCGTAAGCTGCAGCATGAGCTGGACGAGGCAGAGGAGAGGGCTGATATTGCTGAATCTCAGGTCAACAAGCTGAGAGCCAAGAGCCGTGATTCAGGATCCAAGAAGGGGGCTGACGAAGAGTGA
>TCONS_00046885
AACACTAAAAGAGTAATCCAGTACTTTGCCAGCATTGCAGCAGCACCAGGCGGCAAAAAGGATCCATCACAGGAGAAAAAGGGTACTCTGGAGGATCAAATCATCCAGTGTAATCCTGCTCTGGAGGCTTTTGGTAATGCCAAGACCATCAGGAATGACAACTCCTCGCGATTTGGTAAATTTATTCGGATCCATTTTGGAGTCAGTGGAAAGTTGTCTTCTGCTGACATTGAGACTTATCTGCTGGAAAAGTCTCGTGTCACTTATCAGCTCAAGGCTGAGAGGGACTACCACATCTTCTACCAGATCCTGTCTCAGAGGAAACCAGAACTGCTGGAGATGCTGCTCATCACCAATAACCCCTATGACTACTCCTATATCTCCCAAGGAGAGACACAAGTGGCATCTATTGATGACAGGGATGAGCTGATTGCCACTGATGTGGGTGGTTTGTTAAAACAGTTATCAATACAAGATAGCACATTGTACAGGGTTCCTACTATAAACCAAATGTCAACGTTTCTGACTTCTCCCTGACTTTAACTGACTAAATTATGGCTCTATACTGAATAGAAAATAGGCTGCTGTTGTGTCGAGTAGTCCCTCC
>TCONS_00046886
AAGCTCACATCATTGTACCACCTAAAGGACTTGGATTTCATCTGGCGAGGCACACTTTCATCTGATTGACTGAAAGATGGGGGATGCTGTGATGGCAGAGTTTGGGCCTGCGGCTCCGTTCTTACGTAAATCAGATAAGGAGCGTCTGGAGGCCCAAACTCGTCCTTTTGACATGAAGAAGGAGTGTTTCGTGCCTGATCCCGAGGTTGAGTATGTCAAAGCCTCCGTCACCAGTAGAGACGGTGATAAAGTCACTGTTGAGACTGAATTTGGGAAGACCGTCACTGTGAAGGAGGTTGACTGTCACCCTCAGAACCCGCCAAAGTTTGATAAGATTGAGGACATGGCGATGTTCACCTTCCTGCACGAGCCTGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCCTGGATGATCTACGTGAGTGGAGTCTTAAAACACTCTCACACTCACTTTATGATGGAGGAGCAGATCTAAAGCTGCTGTCGATCTCTTCCAGACCTACTCTGGCCTCTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTACAATCAGGAGGTGGTCGTTGCCTACAGAGGAAAGAAGAGGACTGAAGCTCCTCCTCACATCTTCTCCATCTCTGACAACGCCTACCAGTACATGCTGTCAGGTGATTAACTCACTTGTAGAAATGAGCCAataataatgaacatgcacaatattgatttTGTGGGCACGTCAAAATAtcacaaatattaattattattatatcactGATGCTGTTGTATTCCCAGTGGTTTTTCATCACAGCAGCAAATTAACGACTTAATAAACTTGTTTGTA

Function

symbol description
smyhc2 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within slow-twitch skeletal muscle fiber contraction. Predicted to be part of myosin complex. Is expressed in esophagus and musculature system. Human ortholog(s) of this gene implicated in atrial heart septal defect (multiple); heart conduction disease (multiple); and intrinsic cardiomyopathy (multiple). Orthologous to human MYH6 (myosin heavy chain 6).

GO:

id name namespace
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070822-12 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within slow-twitch skeletal muscle fiber contraction. Predicted to be part of myosin complex. Is expressed in esophagus and musculature system. Human ortholog(s) of this gene implicated in atrial heart septal defect (multiple); heart conduction disease (multiple); and intrinsic cardiomyopathy (multiple). Orthologous to human MYH6 (myosin heavy chain 6).

Ensembl:

ensembl_id ENSDARG00000103969

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046753 False 5896 mRNA 0.49 39 40680153 40700596
TCONS_00046885 False 607 lncRNA 0.44 5 40694007 40696400
TCONS_00046886 True 830 lncRNA 0.46 4 40698087 40700596

Neighbor

gene id symbol gene type direction distance location
XLOC_023702 smyhc1 coding downstream 11945 40656510 ~ 40668208 (-)
XLOC_023701 aoc1 coding downstream 670707 40001290 ~ 40009446 (-)
XLOC_023700 slc12a7b coding downstream 794368 39778648 ~ 39885785 (-)
XLOC_023699 GFOD1 coding downstream 908108 39740382 ~ 39772045 (-)
XLOC_023698 CT573356.1 coding downstream 953175 39726846 ~ 39726978 (-)
XLOC_023704 smyhc3 coding upstream 12198 40712794 ~ 40726073 (-)
XLOC_023705 CU633479.5 coding upstream 28382 40728978 ~ 40731305 (-)
XLOC_023706 CU633479.1 coding upstream 34400 40734996 ~ 40744672 (-)
XLOC_023707 CU633479.2 coding upstream 62424 40763020 ~ 40774028 (-)
XLOC_023708 NA coding upstream 110935 40811531 ~ 40814280 (-)
XLOC_023665 dre-mir-735 misc downstream 2502126 38177961 ~ 38178027 (-)
XLOC_023689 NA non-coding downstream 1454095 39224712 ~ 39226058 (-)
XLOC_023687 NA non-coding downstream 1525066 39150622 ~ 39155087 (-)
XLOC_023685 NA non-coding downstream 1588290 39032176 ~ 39091863 (-)
XLOC_023684 NA non-coding downstream 1746950 38917646 ~ 38933203 (-)
XLOC_023711 NA non-coding upstream 173345 40873941 ~ 40875493 (-)
XLOC_023713 NA non-coding upstream 207929 40908525 ~ 40910541 (-)
XLOC_023714 NA non-coding upstream 432669 41133265 ~ 41152077 (-)
XLOC_023717 CABZ01084145.1 non-coding upstream 554278 41254874 ~ 41254989 (-)

Expression


Co-expression Network