G458258


Basic Information

Item Value
gene id G458258
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94181510 ~ 94199088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU519122
TTTGTCCTTACCTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCACTGTGATCGCCCCCTTGAGGATATAACCCTCAGAGCAGCTAAAGTTACAGCTGCTTCCGAAGGTGAAGTCTTCTCCACAGCTGATAGCGCCATCCTGTGGCTGCTGGAGGGTAGGGCAGCTTACAGCAATACACTGCGGCTGTGAGTCGTTCCACTGTCCCGAGGCTCCACACTGCAGGGTAGTAGAGCTGGAGGCCAGCCTCTCATAGCCCTCCTCACAGGTAAAGGTACAGGTGGACAGGTAGCTGAAGGAGCCCAGGGGATGGGAGCAGGCCATGGAACCCTTCCCAGGTTCATACAGCTCACTGCATAAGACCACTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCAGCGTGATCGCCCCC
>TU519123
AGTCGTTCCACTGTCCCGAGGCTCCACACTGCAGGGTAGCAGAGCTGTAGGCCAGCCTCTCATAGCCCTCCTCACAGGTAAAGGTACAGGTGGACAGGTAGCTGAAGGAGCCCAGGGGATGGGAGCAGGCCATGGAACCCTTCCCAGGTTCATACAGCTCACTGCATAAGACCACTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCAGCGTGATCGCCCCC
>TU519124
TTTGTCCTTACCTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCACTGTGATCGCCCCCTTGAGGAGATAACCCTCAGAGCAGCTAAAGTTACAGCTGCTTCCAAAGGTGAAGTCTTCTCCACAGCTGATAGCGCCATCCTGTGGCTGCTGGAGGGTAGGGCAGCTTACAGCAATACACTGCGGCTGTGAGTCGTTCCACTGTCCCGAGGCTCCACACTGCAGGGTAGTAGAGCTGGAGGCCAGCCTCTCATAGCCCTCCTCACAGGTAAAGGTACAGGTGGACAGGTAGCTGAAGGAGCCCAGGGGATGGGAGCAGGCCATGGAACCCTTCCCAGGTTCATACAGCTCACTGCATAAGACCACTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCAGCGTGATCGCCCCC
>TU519121
TTTGTCCTTACCTTCACAGTGTGGTATCTCCTCACTCCACTCAGCAGCTGATGTGCAGGTCACTGTGATCGCCCCCTTGAGGAGATAACCCTCAGAGCAGCTAAAGTTACAGCTGCTTCCAAAGGTGAAGTCTTCTCCACAGCTGATAGCGCCATCCTGTGGCTGCTGGAGGGTAGGGCAGCTTACAGCAATACACTGCGGCTGTGAGTCGTTCCACTGTCCCGAGGCTCCACACTGCAGGGTAGTAGAGCTGGAGGCCAGCCTCTCATAGCCCTCCTCACAGGTAAAGGTACAGGTGGACAGGTAGCTGAAGGAGCCCAGGGGATGGGAGCAGGCCATGGAACCCTTCCCAGGTTCATACAGCTCACTGCATAAGACCACTGGGGAGGAGAGGGCAGATCGTAATAACTGACTAAATGTGCCACGATGAAGACATTACTCAAgatacacaacaactgaaatatagGAGGTCTAAGCTGTCATACTGGTATAAAGACCGATAGCA

Function

NR:

description
E-selectin-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU519122 False 445 lncRNA 0.56 4 94181510 94199088
TU519123 False 239 lncRNA 0.58 3 94181510 94198699
TU519124 False 445 lncRNA 0.56 4 94181510 94199088
TU519121 True 505 lncRNA 0.52 3 94193498 94199088

Neighbor

gene id symbol gene type direction distance location
scyl3 scyl3 coding downstream 7507 94165238 ~ 94174003 (-)
LOC110524880 LOC106592820 coding downstream 66431 94103599 ~ 94115079 (-)
LOC110524878 LOC106560653 coding downstream 82281 94094979 ~ 94099229 (-)
LOC110524879 LOC106560647 coding downstream 87037 94072988 ~ 94094473 (-)
atf6 atf6 coding downstream 247262 93809803 ~ 93934248 (-)
LOC110524883 LOC106560651 coding upstream 13388 94212476 ~ 94221154 (-)
zgc:153916 LOC106560658 coding upstream 36374 94235462 ~ 94286184 (-)
lmo4b lmo4 coding upstream 629018 94828106 ~ 94863090 (-)
hs2st1b LOC106560611 coding upstream 782336 94978892 ~ 95053916 (-)
LOC110524856 cldn18 coding upstream 912767 95111855 ~ 95124924 (-)
G458231 NA non-coding downstream 45280 94135965 ~ 94136230 (-)
G458221 NA non-coding downstream 46739 94118101 ~ 94134771 (-)
G458219 NA non-coding downstream 47978 94133007 ~ 94133532 (-)
G458160 NA non-coding downstream 177412 94002456 ~ 94004098 (-)
G458159 NA non-coding downstream 180417 94000542 ~ 94001093 (-)
G458269 NA non-coding upstream 12763 94211851 ~ 94212147 (-)
G458280 NA non-coding upstream 35912 94235000 ~ 94235437 (-)
G458283 NA non-coding upstream 50894 94249982 ~ 94250792 (-)
G457909 NA other downstream 317896 93860846 ~ 93863614 (-)
G457742 NA other downstream 718431 93462352 ~ 93463079 (-)
G457740 NA other downstream 739097 93441900 ~ 93442413 (-)
G457595 NA other downstream 1161230 93018394 ~ 93020280 (-)
G457537 NA other downstream 1214518 92950678 ~ 92966992 (-)
G459282 NA other upstream 1359602 95558690 ~ 95559210 (-)
G459323 NA other upstream 1403335 95602423 ~ 95602927 (-)
G459813 NA other upstream 1988380 96187468 ~ 96187983 (-)
G460020 NA other upstream 2261819 96460907 ~ 96464598 (-)
G460331 NA other upstream 2581755 96780843 ~ 96782021 (-)

Expression


Co-expression Network