G458260


Basic Information

Item Value
gene id G458260
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 94184544 ~ 94201958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU519127
CAGGGGAATACAATATATAACTTTCTGTAGTTTGTATAAAATAGCTGTCAAGATCAGTATCATAAGAAATGTGTCCACTTGTGGTCATATACCAGCCAGTGGTGAACAATTTGTTCAATACAAAACTCCCTTAGggagaaaaaatacattttctgtaGGACCATCATGAGAACAGATGATTCTGTATACTCAACGTAGCACCTCTCTCCCAGTCAGACGATTCAAGGCTATCTAACCTACTACATTACAATACTGAGGAACTGTGATCCAGGTGTGACCAGCAGATCTTCTTTGAAAACAGAGCCAGCCTGTTGTTCCTGCTGTTGTTCCTGTTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCATGCTGTTGTTCCTGCTGTTGTTCCTGCTGTTattgttgttggtCTCTATATCAGGCTTTCGATGCTGTTCCTGTAGGTCTGTAAAGGATGCTCAATGTCTGAGGTGCTGTTCAGATCAAACTTGTTA
>TU519128
ATTTAAAAAGACACTTTTTAAACATCAAATGTAATTCTGTAACACACAGACTgtggtttaaaaataaatatgacTTAAATACTGAAAGGCATTGATTTCACAGTTCTGTAAAATCATACAAATATATTAATTATACAGGGGAATACAATATATAACTTTCTGTAGTTTGTATAAAATAGCTGTCAAAATCAGTATCATAAGAAATGTGTCGACTTGTGGTCATATACCAGCCAGTGGTGAACAATTTGTTCAATACAAAACTCCCTTTGggagaaaaaatacattttctgtaGGACCATCATGAGAACAGATGATTCTGTATACTCAACGTAGCACCTCTCTCCCAGTCAGACGATTCAAGGCTATCTAACCTACTACATTACAATACTGAGGAACTGTGATCCAGGTGTGACCAGCAGATCTTCTTTGAAAACAGAGCCAACCTGTTCCGACTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCctgctgttgttattgttgttggtCTCTATATCAGGCTTTCGATGCTGTTCCTGTAGGTCTGTAAAGGATGCTCAATGTCTGAGGTGCTGTTCAGATCAAACTTGTTA
>TU519129
CAGGGGAATACAATATATAACTTTCTGTAGTTTGTATAAAATAGCTGTCAAGATCAGTATCATAAGAAATGTGTCCACTTGTGGTCATATACCAGCCAGTGGTGAACAATTTGTTCAATACAAAACTCCCTTAGggagaaaaaatacattttctgtaGGACCATCATGAGAACAGATGGTATACTCAACGTAGCACCTCTCTCCCAGTCAGACGATTCAAGGCTATCTAACCTACTACATTACAATACTGAGGAACTGTGATCCAGGTGTGACCAGCAGATCTTCTTTGAAAACAGAGCCAACCTGTTCCGACTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCCTGCTGTTGTTCctgctgttgttattgttgttggtCTCTATATCAGGCTTTCGATGCTGTTCCTGTAGGTCTGTAAAGGATGCTCAATGTCTGAGGTGCTGTTCAGATCAAACTTGTTA

Function

NR:

description
LOW QUALITY PROTEIN: E-selectin-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU519127 False 493 lncRNA 0.41 3 94184544 94201808
TU519128 False 616 lncRNA 0.37 2 94184544 94201958
TU519129 True 476 lncRNA 0.41 2 94184544 94201808

Neighbor

gene id symbol gene type direction distance location
scyl3 scyl3 coding downstream 10541 94165238 ~ 94174003 (-)
LOC110524880 LOC106592820 coding downstream 69465 94103599 ~ 94115079 (-)
LOC110524878 LOC106560653 coding downstream 85315 94094979 ~ 94099229 (-)
LOC110524879 LOC106560647 coding downstream 90071 94072988 ~ 94094473 (-)
atf6 atf6 coding downstream 250296 93809803 ~ 93934248 (-)
LOC110524883 LOC106560651 coding upstream 10518 94212476 ~ 94221154 (-)
zgc:153916 LOC106560658 coding upstream 33504 94235462 ~ 94286184 (-)
lmo4b lmo4 coding upstream 626148 94828106 ~ 94863090 (-)
hs2st1b LOC106560611 coding upstream 779466 94978892 ~ 95053916 (-)
LOC110524856 cldn18 coding upstream 909897 95111855 ~ 95124924 (-)
G458231 NA non-coding downstream 48314 94135965 ~ 94136230 (-)
G458221 NA non-coding downstream 49773 94118101 ~ 94134771 (-)
G458219 NA non-coding downstream 51012 94133007 ~ 94133532 (-)
G458160 NA non-coding downstream 180446 94002456 ~ 94004098 (-)
G458159 NA non-coding downstream 183451 94000542 ~ 94001093 (-)
G458269 NA non-coding upstream 9893 94211851 ~ 94212147 (-)
G458280 NA non-coding upstream 33042 94235000 ~ 94235437 (-)
G458283 NA non-coding upstream 48024 94249982 ~ 94250792 (-)
G457909 NA other downstream 320930 93860846 ~ 93863614 (-)
G457742 NA other downstream 721465 93462352 ~ 93463079 (-)
G457740 NA other downstream 742131 93441900 ~ 93442413 (-)
G457595 NA other downstream 1164264 93018394 ~ 93020280 (-)
G457537 NA other downstream 1217552 92950678 ~ 92966992 (-)
G459282 NA other upstream 1356732 95558690 ~ 95559210 (-)
G459323 NA other upstream 1400465 95602423 ~ 95602927 (-)
G459813 NA other upstream 1985510 96187468 ~ 96187983 (-)
G460020 NA other upstream 2258949 96460907 ~ 96464598 (-)
G460331 NA other upstream 2578885 96780843 ~ 96782021 (-)

Expression


Co-expression Network