XLOC_023710 (CU633479.6)


Basic Information

Item Value
gene id XLOC_023710
gene name CU633479.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 40855741 ~ 40860603 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046759
gttttaaagtgcaataaaataaaataaaattgaaataaaaacaaaatcccgGAATCTCTCGCACATCCCTAGAATTTCTGTAACTTACACCCGACAAACCTTTACCTCAGATATCAAACACTATTAACGACCTCTTCATCATCCCAGACGTCTAATTAAATCCAGCAACGATTAAAACGCTGTGTTTGTGCGCATTAAATGTGACACTCACCCCATGTACATGATATCCGCCCTGTGTAGCAAACACGCTCTGAATGAGACCCATACTGAACTGAATACACacgaatactatggcgaaggtaCTCATGAATATTAATCAACGCGCGAGCATGCTACTCAGCAACTTTCTTAAAGcgtctcattaatattcattcaaaGTCTGCTGTTTTAGCCAATCACGCTGGACGTCACGAATCCTTCGCCATAGTAGGAATCGTTCGGTCGGTTTGTTTAGCTATTTGAGTGtttttaatgttactttttacACTTACCGTTTCATCAAAAAGGAGAAAAACGAGATATGATAGTGTGTGGTGCAAATTAACACTAATAAAACATTGAAGTGATTCGTATATGCGTGTTTTCGTTTATTTAAACAGACATAAGCAGTCGATGGTAGAATTAAAAGATCGCTAGGAGTTCATAACACACGAAGCGTGCATAAGATTGATTAGTATTCCTGTACAGGTGTCTAATGTTGAGTAGCAACCGCAGTTTTCCGTTGTTGTAAATCACTGCTGATTTTCTGACGCGATAAATGCCTTAAAACCGCTTATTTTGTCGGGCTTACATATGTCAGAGGAGGATAAAACTTGTTTGGTAAGTTCTGAATTTGTTTTGACTCGTATTTTATTCCCATTGTGCGCTTAAAGTGATAATATGTCATGTTTGTTCTTCACAGCCgttgattatatattatatgaggGAGAGATACTACAGACATGCCATCAATACAGCTGCGAGGAGTTTAAAAGTGTACAATAATGATCCTGTGCTCCGTTTCTTCAAAGCTTTTGCAACTCTGATGGAAGGTCACTCACAGGAGGCTCTACAAGAGCTCATCCTGCTGAAGGatcatcctcatctgtctctGTGTTCAACAGTAGCTCTCATTTACGCACACAAACACTGTGAGACTGTCGGTACGTCTGAGTTTATTAAAATGTCTCGTGGATGTTTAGGATGCATTGAGAATCTGGAAAACAGCTGAAATATACAGTAGATTTCATAAACacgtaaaaatattaataaatcaaattaaataaaggaCAGATAAATTCTGAAGTACGGAACCGGTTATTTGACTGATATTTTTGTAATGTATACCAGGAACCTGAGGAGGACATTAAAAAACTCTGGATATAAAAAGAGGTCACTATTCCAAAACGAAGATTCAAACAGAAACAATAAAGTGTCTTTCCTCTGTCGGGGGTTTTCCCTACTAAAAGTAACTATTAATGTTACTACAGACGTTAACACAGACGCAATGCAAGACTTGTAGAACGATTCCATCAATGTCTTCTCTatattgacatttacatttagtcatttagcagacgcttttatccaaagcgacttacaaatgaggataaggaagcaatttacacaactttaagagcaacaatgaataagtgctgtagacgagtttcaggtatgtaaagtgtaagaagcaaaacattggtaattattattattattttttttattttttatttttttgcagattaggaagtgaagtggagactaaatacttgagtttttagtcgtttcttgaagacagcgagtgactctgccgttctgatgcagttagggagttcattccaccaactgggcagattgaatgtgagagttcgggaaagtgatttcttccctctttgggatggagccacgaggcgacgttcattcacagaacgcaagtttctggaggacacatacatctgcagaagtgagagcagataagaaggagcaaagccagaagtcgctttgtaagcaaacatcagagctttgaatttgatgcgagcagcaactggcagccagtgcaaacggatgagcagcggagtgacatgtgctcgtttaggttcattaaagaccactcgtgctgctgcgttctggagcagctgaagaggtttgatagagttagctggaagcccggctagtagagagttgcaataatccagtctggagagaacaagagcttgaacaaggagttgagctgcatgttcagataggaagggtcggatctttctgatgttatagagtgcaaatctgcacgatcaagcagttctagagatgtggtcagagaagtttagttggtcatcaatcgttactccaaggcttttcaccattttggatgcagtaatggttgccccatccatctagattgaaaagttatgatgtagagtcgggttggcagaaacttcaagcatttctgttttcgcgaggttaagctgaagatgatgatctctcatccagtgtgaaatgtccaacaggcaggctgagatgcaagCCGGAactgagggatcatcagggtgaaaagagaggtatagctgggtatcatcagcatagcaatggtaggagaatccatgctTCTTGATGACTGATCCTAGagatgtcgtgtagatggagaagagaagatAAAGATGTGTGTCTTATATTAAAGATAAAGATGTGTATCTTCTGctttgtacactgcaaaaatatcagttaatgaacagtttctgtatttagtgtgtgttgtgtttttgtggttgtgaattgcattatgggatgttgaactctgctctgttgacttctgatgttgaaaattcaactctaatgcttaacaaagtgacatttcagtaatttgagatagtataatgtataagaaataataaagaaataaagtgtgtaaaataacagtaaatgtgctgcagtttataaCAAGATTTccctgtaatatacaacaccaacccagacaatacagcactgcacactattacacataggtagaaaagtcactttttaaaaaaactttaaggtCAAAAGTTGCTGGACGAAaggtcaacatcccataatgcaacttaaaagcagaaataaacagagaaaaataaaaacatgaatcacaaaatgcagaaaagtgctaatttatggatatttcttTTAATGTACACACACTGCTCTGAGTGGCTGATGAATGAAATGAGTGAGGGATTCAGGGATCttctgcttttgtttgtttgttttgttttttgtccaCATGAGATGAAGATGCTGTGAATGAGCTGAACTCTGAGCTGAAGCGCTCTGGATCTACAGCCGGTGAAAGAGCGCTTTATTACGCAGCTCTGATCTACTGGATCCTCCAGATGAACCTCAAAGctaaaacatgcattaaaaagaTGCTGAAAATCTCGGAGACGTCACCTGAGGTTCGTTTGACTCTCTAATGCTttcttaagctgtggtcacactgcaattttctccccatagacttccattcatacgcaagctcatacgtcagaccggaaacacaagctCATGAGACAGATTTTGCAAAcagttgcaaagttcaagcttggttgactctgacctgcgaaatcgcatcacttgactgcgtgagaccaatcg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116146

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046759 True 3606 mRNA 0.39 2 40855741 40860603

Neighbor

gene id symbol gene type direction distance location
XLOC_023709 cebp1 coding downstream 25247 40820699 ~ 40830494 (-)
XLOC_023708 NA coding downstream 41461 40811531 ~ 40814280 (-)
XLOC_023707 CU633479.2 coding downstream 81713 40763020 ~ 40774028 (-)
XLOC_023706 CU633479.1 coding downstream 111069 40734996 ~ 40744672 (-)
XLOC_023705 CU633479.5 coding downstream 124436 40728978 ~ 40731305 (-)
XLOC_023711 NA coding upstream 13338 40873941 ~ 40875493 (-)
XLOC_023712 wdr48a coding upstream 15644 40876247 ~ 40901410 (-)
XLOC_023713 NA coding upstream 47922 40908525 ~ 40910541 (-)
XLOC_023714 NA coding upstream 272662 41133265 ~ 41152077 (-)
XLOC_023715 acvr2ba coding upstream 306666 41167269 ~ 41220538 (-)
XLOC_023665 dre-mir-735 misc downstream 2677714 38177961 ~ 38178027 (-)
XLOC_023698 CT573356.1 non-coding downstream 1128763 39726846 ~ 39726978 (-)
XLOC_023689 NA non-coding downstream 1629683 39224712 ~ 39226058 (-)
XLOC_023687 NA non-coding downstream 1700654 39150622 ~ 39155087 (-)
XLOC_023685 NA non-coding downstream 1763878 39032176 ~ 39091863 (-)
XLOC_023717 CABZ01084145.1 non-coding upstream 394271 41254874 ~ 41254989 (-)
XLOC_023720 NA non-coding upstream 473463 41334066 ~ 41334636 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G310868 NA non-coding NW_019172857.1 APWO02000121.1 192421 ~ 193096 (+)