XLOC_023711


Basic Information

Item Value
gene id XLOC_023711
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 40873941 ~ 40875493 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047270
ctgaaggatcatgtgactataaactaaaaattcagcttttacagtacattttataagatatttaaaaaaacagtcagcTATTTAAAACCATATATACttgaatattgaatattttataattaaataaagcatatttcatttaataatccTAAAAAAATATTACTCAACTGTTCatcgatgatgatgatggtgatggtaataataatgtttattttgctgcaAATCAGCATAATTAAGTGATTTCTGAGGGATCAAGTGACTGGAAATTAACAATTCagctgtaaaataataaataaacaacattttataatatttttaaagaaaaaaacagcttttttaaacagtatataatagaatatttatatatatatatatatatatttacatatttaaataaactactGTTCatagatgatgatgataataataataatgcatatttatttagcaGCAAATCAGCTTAATGtcatgatttctgaaggatcacgttACTGGAAACTAAAAAATTAGCTTTGAAACgagaaataaattacaatttataatacagtatattaaaagAGGGCGATTTCAAACACTATATGActgaatatttaatatattataatgaaatatttaaagcataattcattaaataatccCAATAAACATTACTGAACTGTTCagaaatgatgatgataatttttattttgcagtaatttgcataatataattatttcaaaGGGATCATGTGACTGGAAACAGAAAATTCCACTGTGTAATAACAAataagttacattttataatatatttaaagagAAAACAGCGATTTTAAACAGTATAgaattgaatatttaatattataattaaatatttcaataaatgacTACTGTTCACagatgattatgatgataataataaaaataataatgcatatttatattgaaggatcatgtgactgaaaacTAAACATTCAGCTTTGAAATAAGAGAAATAAATGACATGTTATGATATTGTAGATTCAAAGACAGCGATTTTACACCgtatataattgaatatatactatatataattaaatatttaaaacatacacacacacacatatatattatgtaaataggaacttttattttggatgtgatagATCATGATGAATCGTTTGACGGCACTATTTTCTTAAATTGAAATTCTTCCTTCATCCAGATGGATTGCTGCTGAGTGTCATCTTTCCATACATGAACAGGAAAATACACTAAAAatcaatgaataattaattttataaacaaaatgaattattagAGAGCTATTAAAGGGTTTCTGTCGATCCTCCCCAGATTTGCACAGTGTTTGGTGACATGTATTCATGTATATATTTGGTCTTCTCCAAATAAAGGAATAATAAATCCAGTAACATTGAAACCATCAAGGAAACTGAAGAAAGTAAAAGCTCAGAGTTTTTCAGACGCCCGTGTCCACACTCCCCTGTATTTATGCTTCCTGTGCTGATTGTAATTATATGCAGTCTATTTTGGGTAAATAACAGCTTAATAAATTAACCAATAACGAACCAGTTTAAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0021546 rhombomere development biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009888 tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047270 True 1553 lncRNA 0.25 1 40873941 40875493

Neighbor

gene id symbol gene type direction distance location
XLOC_023710 CU633479.6 coding downstream 13338 40855741 ~ 40860603 (-)
XLOC_023709 cebp1 coding downstream 43447 40820699 ~ 40830494 (-)
XLOC_023708 NA coding downstream 59661 40811531 ~ 40814280 (-)
XLOC_023707 CU633479.2 coding downstream 99913 40763020 ~ 40774028 (-)
XLOC_023706 CU633479.1 coding downstream 129269 40734996 ~ 40744672 (-)
XLOC_023712 wdr48a coding upstream 754 40876247 ~ 40901410 (-)
XLOC_023713 NA coding upstream 33032 40908525 ~ 40910541 (-)
XLOC_023714 NA coding upstream 257772 41133265 ~ 41152077 (-)
XLOC_023715 acvr2ba coding upstream 291776 41167269 ~ 41220538 (-)
XLOC_023716 xylb coding upstream 358262 41233755 ~ 41267184 (-)
XLOC_023665 dre-mir-735 misc downstream 2695914 38177961 ~ 38178027 (-)
XLOC_023698 CT573356.1 non-coding downstream 1146963 39726846 ~ 39726978 (-)
XLOC_023689 NA non-coding downstream 1647883 39224712 ~ 39226058 (-)
XLOC_023687 NA non-coding downstream 1718854 39150622 ~ 39155087 (-)
XLOC_023685 NA non-coding downstream 1782078 39032176 ~ 39091863 (-)
XLOC_023717 CABZ01084145.1 non-coding upstream 379381 41254874 ~ 41254989 (-)
XLOC_023720 NA non-coding upstream 458573 41334066 ~ 41334636 (-)
XLOC_023721 NA non-coding upstream 462813 41338306 ~ 41343046 (-)

Expression


Co-expression Network