XLOC_023712 (wdr48a)


Basic Information

Item Value
gene id XLOC_023712
gene name wdr48a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 40876247 ~ 40901410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046760
GGCGTCAACATGTAAGATGGCGACGCATCACAGGCAGAATGCAGCGGGGCGCAGGAAAGTGCAGGTGTCATATGTGATCAGAGATGAGGTGGAGAAATATAATCGTAATGGAGTCAATGCGCTACAGCTGGATCCAGCTCTTAACCGGCTCTTCACGGCCGGACGAGACTCCATTATTAGGATATGGAGCGTCAACCAGCACAAGGATCCTTACATTGCATCAATGGAGCACCACACAGACTGGGTGAATGACATCGTCCTCTGCTGCAATGGAAAGACGTTGATCTCAGCATCGTCAGACACTACAGTGAAGGTCTGGAATGCACATAAGGGCTTCTGTATGTCCACACTGCGAACGCACAAGgacTATGTTAAAGCATTAGCGTATGCTAAAGACAAAGAGCTGGTGGCTTCAGCAGGGCTGGACAGACAAATCTTCCTCTGGGATGTGAACACACTGACAGCGCTGACCGCATCCAACAACACCGTCACTACATCTTCTCTCAGCGGAAACAAGGACTCTATCTACAGTTTGGCCATGAATCAGATGGGGACGGTTATAGTTTCGGGATCCACTGAAAAGGTTTTAAGAGTGTGGGATCCACGAACCTGTGCCAAACTCATGAAACTGAAGGGACACACAGACAACGTCAAATCTCTGCTGCTCAACAGAGACGGCACTCAGtgtCTGTCAGGCAGTTCAGACGGGACGATCCGGCTCTGGTCTTTGGGTCAGCAGCGGTGCATCGCCACGTATCGCGTCCATGATGAAGGTGTGTGGGCTCTGCAGGTCAACGAGGCCTTCACACACGTTTACTCCGGCGGACGCGACCGCAAGATATACTGCACTGACTTGCGCAATCCTGACATACGGGTGCTCATCTGTGAAGAGAAGGCACCGGTGCTAAAGATGGAGCTGGACCGGTCAGCAGATCCACACAACGCCATCTGGGTTTCCACCACCAAGTCCACAGTGAACAAATGGtcTCTGAAGGGTATCCATAATTTCCGAGCGTCTGGAGATTACGATAATGACTGCAGTGCTCCGCTGACGCCACTCTGCACACAGCCTGAGCAGGTCATCAAAGGTGGCGCCAGTATAATTCAGTGCCACATTCTGAATGACAAGAGACACATTCTGACCAAAGACACCAATAATAATGTGGCGTACTGGGATGTGCTGAAGGCCTGTAAAGTTGAAGATCTGGGCAAGATGGAGTTTGATGAGGAGATCAAGAAGCGCTTCAAGATGGTTTATGTGCCCAACTGGTTTTCAGTGGACCTGAAGACTGGGATGTTGACTATAACGCTGGACGAGAGCGACTGTTTTGCAGCCTGGGTTTCTGCTAAAGACGCTGGATTCAGCAGCCCTGACGGATCCGACCCCAAACtgAATCTCGGTGGGCTGCTGCTTCAGGCTCTGCTGGAGTTTTggccacgcacacacataaacccTATGGATGAGGAGAAACGCTGGACAAACGCAGAAACACTCTCAGTTTCAGTTTCTCCTTTATTATTTTCTCTCATTTCACATTCCAGTGATGTGTTTGTTGCCAATGACGTCTTCAGATCTGCGGAACTGCTTTAAAAAACCAACCGTGAGTCTTGAAGGAGCACTGAAGAACTCCGTTTCCCATGATGCATCTCTCTCACTGACATGCTGTGGTCATCAGTGCATCCATTCTGTACATATACTGTAATTATTTTGTAGTCCAGTTGGAGCATAGGAGGTTTTTATTTACCTTTTCTGTTTTTAAGAAAACGTACGGTGTCTTTAAAAAGGTGCTTATTCATGTCAAATATGAGGACATGTAACTCGTAACGTCACAAAGTAGGAAtaagtcatttaaagaaaaaataagcaTGGATGAAAATATGAAGGTGAGTTTGATTTAAAGTAGTGCGGTCAAATGATTAATCACAGTCTAAataaaaggtttatttatttacgtaatatatatatatatatatatatatatatatatatatatatatatattacacacacacatatatatatatatatacataaaaacacacacataattaaagtcataattatttgcccttctatgaacatttttattcaacatcaaatatttctcaaggGATGTTTAATTAGAGCAagaaaaattttcacagtaatttctataatattttttcttctggaaagtcATATTGATTTTACTTTGGtcggaataaaagcagttttaaattgt

Function

symbol description
wdr48a Orthologous to human WDR48 (WD repeat domain 48).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061110-55 Orthologous to human WDR48 (WD repeat domain 48).

Ensembl:

ensembl_id ENSDARG00000102734

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046760 True 2222 mRNA 0.44 15 40876247 40901410

Neighbor

gene id symbol gene type direction distance location
XLOC_023711 NA coding downstream 754 40873941 ~ 40875493 (-)
XLOC_023710 CU633479.6 coding downstream 15644 40855741 ~ 40860603 (-)
XLOC_023709 cebp1 coding downstream 45753 40820699 ~ 40830494 (-)
XLOC_023708 NA coding downstream 61967 40811531 ~ 40814280 (-)
XLOC_023707 CU633479.2 coding downstream 102219 40763020 ~ 40774028 (-)
XLOC_023713 NA coding upstream 7115 40908525 ~ 40910541 (-)
XLOC_023714 NA coding upstream 231855 41133265 ~ 41152077 (-)
XLOC_023715 acvr2ba coding upstream 265859 41167269 ~ 41220538 (-)
XLOC_023716 xylb coding upstream 332345 41233755 ~ 41267184 (-)
XLOC_023717 CABZ01084145.1 coding upstream 353464 41254874 ~ 41254989 (-)
XLOC_023665 dre-mir-735 misc downstream 2698220 38177961 ~ 38178027 (-)
XLOC_023698 CT573356.1 non-coding downstream 1149269 39726846 ~ 39726978 (-)
XLOC_023689 NA non-coding downstream 1650189 39224712 ~ 39226058 (-)
XLOC_023687 NA non-coding downstream 1721160 39150622 ~ 39155087 (-)
XLOC_023720 NA non-coding upstream 432656 41334066 ~ 41334636 (-)
XLOC_023721 NA non-coding upstream 436896 41338306 ~ 41343046 (-)

Expression


Co-expression Network