G459039


Basic Information

Item Value
gene id G459039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95189019 ~ 95259610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520045
ggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacccatacagaccagggactgatcacccattatagttctaaccaatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccatcataattctaacctatacagaccagggactgaccatccattataattctaaccaatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccgtccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgatcacccattatagttctaaccaatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaatttatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacaggccagggactgatcatccattataattataacctatacagaccatggactgaccatccattataatgctaacctatacagaccagggactgatcacccattgtagttctaaccaatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattatagttctaacctatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaaccaatacagaccagggactgaccatccattataactctaacctatgcagaccagggactgaccatccattataattctaacctatacagaccagggactgatcatccattataattctaaccaatacaaaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataactaaacctaaacagaccagggactgaccatccattataattctaacctatacagaccagggactgatcatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgatcatccattataattctaaccaatacagaccagggactgaccatccattataattctaaccaatacagaccagggactgaccatccattataatttcaacctatacagaccagggactgaccatccattataattctaacctataaagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattatcattctaacctatacagaccagggactgaccttccattataattctaacctatacagaccagggactgatcatccattataattctaacctatacagaccaggaactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgatcatccattataattctaaccaatacagaccagggactgaccatccattataattctaaccaatacagaccagggactgaccatccattataattctaacctataaagaccagggactgaccatgcattataattctaacctatacagaccagggactgatcatctatttaattctaaccaatacagaccagggactgaccatccattataattctaacctatacagaccatggactgatcatccattataattctaaccaatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctgtaaagaccagggactgaccatccattataattctaacctatagagaccagggactgaccacccattatcattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattatacatctaacctatacagaccagggactgaccatccattata
>TU520048
cattataattctaacctatacagaccagggactgatcacccattatagttctaaccaatacagaccagggactgaccatcccttataactctaacctatacagaccagggactaaCCATcgattataattctaaccaatacagaccagggactgaccatccattataattctaacctatacagaccagggactgatcatccatttaattctaaccaatacagaccagggactgaccatccattataattctaacctatacagaccatggactgatcatccattataattctaaccaatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattataactctaacctatacagaccagggactgaccatccattataattctaacctgtaaagaccagggactgaccatccattataattctaacctatagagaccagggactgaccacccattatcattctaacctatacagaccagggactgaccatccattataattctaacctatacagaccagggactgaccatccattatacatctaacctatacagaccagggactgaccatccattata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU520045 False 2697 lncRNA 0.40 2 95189019 95254704
TU520048 True 686 lncRNA 0.40 2 95189019 95259610

Neighbor

gene id symbol gene type direction distance location
LOC110524856 cldn18 coding downstream 64095 95111855 ~ 95124924 (-)
hs2st1b LOC106560611 coding downstream 135103 94978892 ~ 95053916 (-)
lmo4b lmo4 coding downstream 325929 94828106 ~ 94863090 (-)
zgc:153916 LOC106560658 coding downstream 902835 94235462 ~ 94286184 (-)
LOC110524883 LOC106560651 coding downstream 967865 94212476 ~ 94221154 (-)
sox14 sox14 coding upstream 85538 95345148 ~ 95349127 (-)
trnap-ugg-7 NA coding upstream 437551 95697161 ~ 95697232 (-)
hdlbpa hdlbp coding upstream 439826 95699436 ~ 95722598 (-)
dtymk dtymk coding upstream 654264 95913874 ~ 95922379 (-)
zgc:103559 LOC106560661 coding upstream 672376 95931986 ~ 95957022 (-)
G459028 NA non-coding downstream 2695 95151046 ~ 95186324 (-)
G459004 NA non-coding downstream 60266 95128303 ~ 95128753 (-)
G459003 NA non-coding downstream 61586 95126914 ~ 95127433 (-)
G458917 NA non-coding downstream 202266 94986044 ~ 94986753 (-)
G459068 NA non-coding upstream 22652 95282262 ~ 95282818 (-)
G459132 NA non-coding upstream 41451 95301061 ~ 95301383 (-)
G459134 NA non-coding upstream 43002 95302612 ~ 95302831 (-)
G459192 NA non-coding upstream 156591 95416201 ~ 95416413 (-)
G459195 NA non-coding upstream 162040 95421650 ~ 95421956 (-)
G457909 NA other downstream 1325405 93860846 ~ 93863614 (-)
G457742 NA other downstream 1725940 93462352 ~ 93463079 (-)
G457740 NA other downstream 1746606 93441900 ~ 93442413 (-)
G457595 NA other downstream 2168739 93018394 ~ 93020280 (-)
G457537 NA other downstream 2222027 92950678 ~ 92966992 (-)
G459282 NA other upstream 299080 95558690 ~ 95559210 (-)
G459323 NA other upstream 342813 95602423 ~ 95602927 (-)
G459813 NA other upstream 927858 96187468 ~ 96187983 (-)
G460020 NA other upstream 1201297 96460907 ~ 96464598 (-)
G460331 NA other upstream 1521233 96780843 ~ 96782021 (-)

Expression


Co-expression Network